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Join Legend
Serious alignment problem, requires review.
Zero, or more than one, overlaps
Half dove-tail &50 bp
Alignment identity &98%
Alignment length &50 bp
&2 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Minor alignment problem.
Exactly one overlap
Half dove-tail &0 bp and <=50bp
Alignment identity &99.6%
Alignment length &2000 bp
&0 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Excellent alignment, meets all defined criteria.
Exactly one RuleInfo
Half dove-tail &=0 bp
Alignment identity &=99.6%
Alignment length &=2000 bp
&=0 gaps, each gap &25 bp, not marked as an SSR
&=0 gaps, each gap &50 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AC and AC
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
Switch Points
L4295172683--chenhcTaxid 9606 chrom 11 Primary assembly 12:38:49.7301620638703GRCh38, GRCh37, Hs36
A1168387--chenhcTaxid 9606 chrom 11 Primary assembly 11:57:18.9004252938703
Mismatches = 10, Gaps = 2, Length = 4296
Percent identity = 99.77%
Score = 8406 bits (4240), Expect = 0
8 BAC and 49 Fosmid bridging clones.
8 BAC and 49 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
gaattccagtcttttgattttggactttccagcctccagaactgtaataaataaattttg 4235
......................a..................................... 172624
gttctttataaattactcactctcatacattttgttatagcagcacaaatagattagaaa 4175
............................................................ 172564
gacaaaaattggtacagggagtgggtgttactacagtaaatatatgaaaatgtgtaaatg 4115
............................................................ 172504
gcttttaaattcgataatgggtagaggctgggacaattttgaagtgtatagtagaaaatt 4055
............................................................ 172444
cctaggttgccaggaatgaagcattaagggtaattatgttgagggctcagaagaagaaaa 3995
............................................................ 172384
gagctatagagagaacgtccttcttcttagagattatctaagtgttcataatcagaattc 3935
............................................................ 172324
tggcaggaatatggacagaagaggcaattctgataaggtctcagaccgaaattaggatta 3875
............................................................ 172264
tcttattggaaactgaaagaaaatccatccttgctacaaagtggcaaagaacttggccaa 3815
............................................................ 172204
attgtgtttgtgtcctattactatgtagagggcagaatttaagagcaatgagctagtata 3755
............................................................ 172144
tttggtgaaagaaatctccaagcaaagtgttcaggctgctccatgtcttctcttgactgc 3695
............................................................ 172084
ttatggtaaaacatgagaagaaagaaatgaattaaagacagaatttataatgaaaagtgg 3635
............................................................ 172024
agcggaacttaaagatttacaaaattatcagcctgatcaggttgtgaagactaaaaaggc 3575
............................................................ 171964
ttgtttagaagagaatatcaagactgtggtcaagaaaatgtttggtaaggagatcagtac 3515
............................................................ 171904
ggatagaagataaccagatgctatttattcttccacgcttatgaatcatagcagtctttc 3455
............................................................ 171844
caggtgtggaatacgctgcttccagataccaaagatgctaccagacagatatgttttatt 3395
............................................................ 171784
cttattggtaagggtaagaaaagaaatttccctttgttttgcataaaatttcctggtatg 3335
............................................................ 171724
ttctaggcaagcataacttcaaagattcctaaattgtcataggctctatcacccactttc 3275
............................................................ 171664
tgaatctaatgtgtgttacctagaaccctggcatacttgcacattttactcgtatgtcat 3215
............................................................ 171604
tgacgttatattgttgatatacgagtcaatataaggttttgtagaataagatagtcaaaa 3155
............................................................ 171544
tcctttttttttactgtaatatgagagagagtaagaatgctaagcataacctgggcaaga 3095
............................................................ 171484
atagatatgtaatctcttgtccatcttatgtgattataaacaatttattttttcccttct 3035
............................................................ 171424
tactagggataaaaaagaaagtgtttactagataaatgggtgcatacatctgagtccatg 2975
............................................................ 171364
ttagcctgctcttatacacctaccatattcatcaaagcagctgtaataagaggtgctact 2915
...........................................c................ 171304
tggttgagttttgggtagtctactttaattctctgggatgcatctgatttttgataggga 2855
...................................a........................ 171244
ataagcagtgaattaaatgcaaactaccacatttatcttctaggtctgccagagtttaca 2795
............................................................ 171184
aatctctgatatttcttttgggatgtgatattgtttctaatttactatcttggttgggga 2735
............................................................ 171124
taaaaaatggcaaatttagaggtttttacttcattttcctactctttccaatagttcttg 2675
............................................................ 171064
ccccatagatcaggatgtaatgtgaaagttgtgtgaattatcaagaatgtccatttccat 2615
............................................................ 171004
tatacctttggaaactaggaaataaccactggttgagtttgtgaacctagtgggccacta 2555
............................................................ 170944
tgagctagatatggacaaacattccactgattacctgacctttatatgattccactctaa 2495
............................................................ 170884
taacagtggctaaatgactaacttagcatttttcctggttctatgagtcttttaattcac 2435
.........................................c.................. 170824
ctttctacatgttctacatcttttacaccttccacgatcctgtcatttctccttcccttg 2375
............................................................ 170764
gcatgggggatctctgtctaagcttacaagagccatcttttttgtttgtttgtttgtttg 2315
............................................................ 170704
tttgagacggagtctctctctgtcgcccaggctggagtgcagtggcgcgatctcagctca 2255
............................................................ 170644
ctgcaagcttcgcctcccggattcatgccattctcctgcctcagcctcccgagtagctgg 2195
............................................................ 170584
gactacaggcgcccaccaccaggcctggctaattttttgtatttttagtagagactgggt 2135
............................................................ 170524
ttcactgtgttagccaggatggtcttgatctcctgacctcgtgatctgctcgcctcggcc 2075
.........................c.................................. 170464
tcccaaaatgctgggattacaggtgtgagccaccgcgcccagcctataagagccatctta 2015
........................................g................... 170404
atagaataaaagcacagtttttttttttttt-aatctcacgtcagagatttaaaatctgg 1956
...............................a......g..................... 170344
tgtcacagtagagtgttctcctatcaataaacttatccgtatccagctttctacccagta 1896
............................................................ 170284
cctgccttttttccctttgatcctgtgtcataaagatatggtattatgtttgctctgctg 1836
............................................................ 170224
gttcctgctagcatgtgtactctgggtcctgcagcttcttctgggcataatccattttat 1776
............................................................ 170164
ccttcaggaagcccaggacttccatacctaggttatcttgttttatatcttgatcccagg 1716
............................................................ 170104
tatatatttggcatctaagaaataaggcaggcatagatcctgagcaggcatatatcatct 1656
............................................................ 170044
tacaaggcaaaagcctctacctgttctccaaacagtaggaggggtggtgagagaaaaaaa 1596
............................................................ 169984
gtgggacatttttgcatgcccagatgcttcagggaaatcttaggtttctagaatttttag 1536
............................................................ 169924
tgtattgacccagaatcccccactccacatctctgtgtcctactctttcctaactagggt 1476
............................................................ 169864
attgagcttggcacagtggacttgctgggactgagaattcatctttctttgctgttcttt 1416
............................................................ 169804
tgattcagtcctcatcttaatctttgcttttctgacctcaggatggaagagataaaaacc 1356
............................................................ 169744
ttttttataagttgcgtagtaggtactctcattttcacacttaaccttaaattgctagca 1296
............................................................ 169684
tattaacctgaacctttccttgtggttttctaatgcatcaatgtgactgaacagtagtca 1236
............................................................ 169624
tctgatttcagatacatgaggacctcaaacaactctataggaaaaaatataataagctga 1176
.....................................c...................... 169564
tttaaaagtgggcaaaagatttgaatagacatttgtcagaagaagacatacaaatgacaa 1116
............................................................ 169504
agagaaatatgaaaaggtgctcaacatcattgatcatcagagaaatgcaaatcaaaacca 1056
............................................................ 169444
cgatgtgatatcatctcatcccagttcaaatggcttttaacccagacaggcaataacaaa 996
............................................................ 169384
tgctggagaggatgtgtagaaaagggaagccttgtatactgttggtgggaatgtaaatta 936
............................................................ 169324
gtacaaccattatggagaatagctcgggggttcctcaaaaaactagaaatacagctacca 876
.........c.................................................. 169264
tattatctagcaatcctactgctgggaatatactcaaaagaaatgaagtcagtatatcaa 816
............................................................ 169204
agagttatccgtgctcccatgtttattgcagcactgttcacaatagacaagatttgaaag 756
............................................................ 169144
caacctgcatccatcaacagatgaatggataaataaaatatggtatttatacacaatgga 696
............................................................ 169084
gtacgatttaaccataaaaagaatgagatcctgtcatttgcaacaacatggatggaactg 636
............................................................ 169024
aagttcattatggtgtgtgaaataagcaggcacagaaagacaaacatcacatgttctcat 576
............................................................ 168964
ttatttctgggatctaaaaatcaaaacaattgaactcatggagatagagagtagaatgat 516
............................................................ 168904
ggttaccagagtctgggaagggtagtggggaagtggggaaaggtagataaggttaatggg 456
............................................................ 168844
tac-aaaaatgatagaaagaatgaataagacctagtatttgatagcacaacagggttaaa 397
...a........................................................ 168784
ataattgttaaatagttaaaataattgtacgttcaaaaataactaaaagagtatacttag 337
..............................a............................. 168724
attatttttaacaaaaacagtaaatgcttgagggaacggataccccattttccacgctgt 277
............................................................ 168664
gattattatgcattacatgcctttaccaaaccatctcatgtacccaataaatatagatac 217
............................................................ 168604
ctactatgtactcataaaaaattataataatgtcatctgattccattgtccttgatatta 157
............................................................ 168544
caacttccctgagtcattgcatggctagggcattcccatccaaggtaattcattctagtt 97
............................................................ 168484
catcaccagtaaaagtttttataattgcaccaatagagcatcccagggtcaatcagcttt 37
............................................................ 168424
ccacttaccacagcagatggtagagctccagaattc 1
.................................... 168388
IdTypeDateWhodidComment
58801InitHasAlign09/30/:00jcherryblast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R'
bandwidths: 501 701
Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/
Running blast for AC and AC
Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R'
126963CreateSwitchPt08/08/:49chenhcFrom Hs build 36.1 agp files
58802ReSetShortOvlp09/04/:48dbo
109580ReRunFndOvlp09/11/:29cgi_chenblast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R'
bandwidths: 501 701
Toolkit version: API built on Sep
2 2008 using
/opt/ncbi/32/c++.by-date/production//GCC342-Release/lib:/netopt/ncbi_tools/c++.by-date/production//GCC342-Release/lib
Running blast for
Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R'
from TPF submission
153286CreateSwitchPt11/11/:18chenhccontig_builder 1.3
Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
Accession%idPosition (strand) Accession%idPosition (strand)
CH17-103L17&AC97.35%pos 80598 (F-) CH17-128I06AC98.66%pos 30990 (R-) &CH17-217D24&AC98.73%pos 119574 (F+) CH17-298J06AC97.26%pos 54699 (R+) AC99.59%pos 86978 (F-) CH17-367J09&AC99.26%pos 6519 (F+) CH17-367J11AC97.73%pos 41053 (R-) AC99.07%pos 6468 (F+) CH17-399B02&AC99.73%pos 48985 (F+) CH17-415L02AC98.38%pos 151980 (R-) AC97.75%pos 115515 (F+) AC100%pos 151980 (R-) &CH17-473K08AC99.2%pos 30990 (R-) &CH17-68J16AC98.21%pos 108885 (R-) AC97.42%pos 61410 (F+) CH17-68O15AC99.74%pos 133128 (R+) &CH17-76L08AC98.87%pos 92760 (R-) AC98.73%pos 75952 (F+) CTC-778M9AC98.8%pos 30437 (R-) AC97.51%pos 99887 (F+) CTD-2001D15AC97.92%pos 141426 (R+) AC100%pos 72070 (F-) CTD-2001D16&AC98.11%pos 72205 (F-) CTD-2009L4AC98.6%pos 27579 (R+) AC99.41%pos 130244 (F-) CTD-2014L23AC98.16%pos 152252 (R+) &AC99.25%pos 152246 (R+) &CTD-2041N13&AC99.26%pos 68460 (F-) CTD-2081E18AC97.56%pos 120245 (R-) &CTD-2128H16AC98.78%pos 40728 (R+) AC98.95%pos 123298 (F-) CTD-2284A19AC100%pos 88431 (R+) AC99.79%pos 12959 (F-) CTD-2341M4&AC100%pos 88420 (F-) CTD-2606G14AC99.45%pos 7427 (R-) &CTD-3035P10&AC98.1%pos 83443 (F-) CTD-3070D19&AC99.33%pos 4289 (F+) CTD-3208J8AC97.18%pos 10761 (R+) &CTD-3233P14&AC99.38%pos 48487 (F+) RP11-1134O13AC97.95%pos 175522 (R+) &RP11-1149D16&AC98.6%pos 68294 (F+) RP11-135K20AC98.92%pos 110535 (R-) &RP11-135M18AC99.6%pos 110532 (R-) &RP11-148I19AC99.63%pos 13 (R+) AC99.7%pos 172674 (F-) RP11-150D18AC99.79%pos 10758 (R+) AC99.8%pos 172683 (F-) RP11-158K8AC99.69%pos 6443 (R+) AC100%pos 152682 (F-) RP11-427O17AC99.84%pos 5104 (R+) &RP11-584I10AC98.95%pos 11805 (R+) &RP11-598H19&AC98.65%pos 38296 (F+) RP11-661H4AC100%pos 92794 (R+) &RP11-773O2&AC99.37%pos 108977 (F+) RP11-79G4&AC99.26%pos 151995 (F+) &AC100%pos 152000 (F+) RP11-805B8&AC97.57%pos 145640 (F+) RP11-876N6AC98.85%pos 5103 (R-) &RP11-937A2&AC99.57%pos 152692 (F+) RP11-939E20&AC97.83%pos 12937 (F+) RP11-99M23&AC99.83%pos 68298 (F+)
Fosmid Ends
Accession%idPosition (strand) Accession%idPosition (strand)
ABC10-AC100%pos 113661 (R+) &ABC10-&AC100%pos 94772 (F+) ABC10-AC98.72%pos 107734 (R+) AC99.52%pos 148268 (F-) ABC10-AC99.68%pos 85260 (R-) &ABC10-AC99.57%pos 14236 (R-) &ABC10-AC97.57%pos 113676 (R+) &ABC10-AC99.38%pos 168819 (R+) &ABC10-AC98.6%pos 32569 (R+) AC100%pos 75912 (F-) ABC10-AC100%pos 119142 (R-) &ABC10-AC99.47%pos 4141 (R+) &ABC10-AC100%pos 23460 (R-) AC98.71%pos 148701 (F+) ABC10-AC100%pos 119136 (R-) AC99.8%pos 79613 (F+) ABC10-AC99.87%pos 147032 (R-) &ABC10-AC98.53%pos 147426 (R-) AC99.67%pos 105819 (F+) ABC10-AC100%pos 125355 (R-) AC100%pos 85530 (F+) ABC10-AC100%pos 125327 (R-) AC99.87%pos 85536 (F+) ABC10-AC100%pos 84723 (R+) AC100%pos 125705 (F-) ABC10-&AC100%pos 169651 (F+) &AC100%pos 1263 (F+) ABC10-&AC98.93%pos 51823 (F-) ABC10-AC98.62%pos 115130 (R+) &ABC10-AC99.85%pos 50697 (R-) AC99.71%pos 9652 (F+) ABC10-AC99.36%pos 122895 (R-) AC99.66%pos 84587 (F+) ABC10-AC99%pos 32542 (R+) AC99.87%pos 75921 (F-) ABC10-AC100%pos 14696 (R-) &ABC10-AC97.96%pos 125836 (R+) &ABC10-&AC99.6%pos 70057 (F-) ABC10-AC99.86%pos 71980 (R+) AC99.72%pos 112905 (F-) ABC10-&AC99.74%pos 57735 (F-) ABC10-AC99.7%pos 71951 (R+) AC99.72%pos 112904 (F-) ABC10-AC99.52%pos 15852 (R-) AC100%pos 143145 (F+) ABC10-AC100%pos 153650 (R+) &ABC10-AC99.28%pos 149773 (R-) &ABC10-AC99.15%pos 126136 (R-) AC98.86%pos 85016 (F+) ABC10-AC99.72%pos 38240 (R-) AC98.83%pos 162705 (F+) ABC10-AC99.47%pos 112514 (R-) AC99.43%pos 72740 (F+) ABC10-AC98.54%pos 80264 (R-) AC99.51%pos 39902 (F+) ABC10-AC99.86%pos 79555 (R-) &ABC10-AC99.21%pos 168821 (R+) &ABC10-&AC98.99%pos 81449 (F+) ABC10-&AC99.71%pos 148839 (F+) ABC10-AC99.84%pos 50131 (R-) AC99.83%pos 7334 (F+) ABC10-AC99.64%pos 117995 (R-) AC99.75%pos 76536 (F+) ABC10-AC99.16%pos 35399 (R+) AC100%pos 73983 (F-) ABC10-AC100%pos 21933 (R-) &ABC10-AC99.04%pos 21821 (R-) &ABC10-AC99.57%pos 21973 (R-) &ABC10-AC99.71%pos 113646 (R+) &ABC10-AC99.87%pos 57873 (R+) AC99.33%pos 99805 (F-) ABC10-AC100%pos 112517 (R-) AC100%pos 72726 (F+) ABC10-AC100%pos 35964 (R-) &ABC10-AC99.39%pos 40036 (R-) &ABC10-AC99.36%pos 168828 (R+) &ABC10-AC99.61%pos 171474 (R+) AC100%pos 40428 (F-) AC99.61%pos 3085 (R+) &ABC10-AC98.29%pos 95913 (R-) &ABC10-AC99.7%pos 135093 (R+) AC99.82%pos 177217 (F-) ABC10-AC100%pos 44872 (R+) AC98.64%pos 87197 (F-) ABC10-AC99.32%pos 139295 (R+) AC99.12%pos 176258 (F-) ABC10-AC100%pos 35959 (R-) &ABC10-AC99.08%pos 146148 (R+) AC98.95%pos 18219 (F-) ABC10-AC99.58%pos 34550 (R-) &ABC10-&AC99.2%pos 57733 (F-) ABC10-AC99.71%pos 38251 (R-) AC99.61%pos 162700 (F+) ABC10-AC100%pos 119164 (R-) &ABC10-AC99.67%pos 122895 (R-) AC99.86%pos 84555 (F+) ABC10-AC100%pos 84706 (R+) AC100%pos 125701 (F-) ABC10-AC100%pos 84721 (R+) AC100%pos 125702 (F-) ABC10-AC99.56%pos 38209 (R-) AC99.35%pos 162721 (F+) ABC10-AC98.72%pos 153647 (R+) &ABC10-AC99.85%pos 4129 (R+) AC99.86%pos 47330 (F-) ABC10-AC98.99%pos 38238 (R-) AC99.57%pos 162709 (F+) ABC10-AC98.49%pos 84731 (R+) AC99.86%pos 125686 (F-) ABC10-AC99.5%pos 136039 (R-) AC97.31%pos 96376 (F+) ABC10-AC97.22%pos 133521 (R+) AC100%pos 5349 (F-) ABC10-AC99.86%pos 46012 (R-) AC100%pos 2775 (F+) ABC11-AC100%pos 123129 (R-) AC97.95%pos 80043 (F+) ABC11-&AC99.33%pos 68681 (F-) ABC11-AC99.77%pos 125943 (R-) &ABC11-&AC99.34%pos 166135 (F-) ABC11-&AC97.66%pos 7454 (F-) ABC11-AC99.61%pos 22725 (R+) AC99.24%pos 64086 (F-) ABC11-&AC98.08%pos 80052 (F+) ABC11-AC99.6%pos 149360 (R+) &ABC11-AC98.77%pos 7786 (R-) &ABC11-&AC99.6%pos 143363 (F-) ABC11-&AC99.19%pos 125886 (F+) ABC11-&AC98.34%pos 80048 (F+) ABC11-AC98.37%pos 74389 (R+) AC99.6%pos 112014 (F-) ABC11-AC98.34%pos 124864 (R-) AC98.54%pos 84556 (F+) ABC11-&AC97.51%pos 23556 (F+) ABC11-&AC99.87%pos 19283 (F+) &AC100%pos 19293 (F+) ABC11-AC98.01%pos 89869 (R-) AC98.49%pos 49492 (F+) ABC11-&AC99.37%pos 58161 (F-) ABC11-AC99.59%pos 149911 (R-) &ABC11-AC100%pos 43690 (R-) AC99.45%pos 4225 (F+) ABC11-AC99.86%pos 104098 (R-) AC98.95%pos 65444 (F+) ABC11-&AC100%pos 49297 (F+) ABC11-AC99.47%pos 45660 (R-) AC99.87%pos 5197 (F+) ABC11-AC100%pos 40953 (R-) &ABC11-AC99.6%pos 55400 (R-) AC99.35%pos 17179 (F+) ABC11-AC99.02%pos 40937 (R-) &ABC11-&AC100%pos 3016 (F-) ABC11-AC99.16%pos 88238 (R+) AC99.42%pos 130007 (F-) ABC11-AC99.22%pos 129032 (R+) AC99.29%pos 167854 (F-) ABC11-AC99.24%pos 159612 (R+) AC99.84%pos 30581 (F-) ABC11-AC100%pos 77943 (R+) AC100%pos 118214 (F-) ABC11-AC98.35%pos 74852 (R+) &ABC11-&AC99.85%pos 3016 (F-) ABC11-&AC99.47%pos 42550 (F+) ABC11-&AC99.53%pos 20315 (F-) ABC11-AC99.33%pos 126605 (R+) &ABC11-&AC100%pos 46772 (F-) ABC11-AC99.08%pos 92600 (R-) &ABC11-&AC99.73%pos 68161 (F-) ABC11-&AC99.61%pos 111749 (F+) ABC11-AC98.81%pos 92603 (R-) &ABC11-AC100%pos 4838 (R+) AC99.57%pos 40088 (F-) ABC11-AC100%pos 126657 (R+) &ABC11-AC100%pos 50645 (R-) AC98.61%pos 12696 (F+) ABC11-AC100%pos 9318 (R-) &ABC11-AC99.81%pos 130925 (R-) AC99.33%pos 90500 (F+) ABC11-&AC99.51%pos 59610 (F+) ABC12-AC99.23%pos 111570 (R-) AC99.15%pos 69163 (F+) ABC12-AC100%pos 136886 (R-) &ABC12-AC99.88%pos 143166 (R+) &ABC12-AC99.62%pos 156884 (R+) AC99.72%pos 29174 (F-) ABC12-AC99.32%pos 156872 (R+) AC98.88%pos 29173 (F-) ABC12-AC98.43%pos 153262 (R-) AC99.29%pos 114805 (F+) ABC12-&AC99.01%pos 28803 (F-) ABC12-&AC98.88%pos 123731 (F-) ABC12-AC99.03%pos 161590 (R-) &ABC12-&AC99.49%pos 118342 (F-) ABC12-AC100%pos 71707 (R-) &ABC12-AC98.15%pos 26825 (R-) AC99.72%pos 156420 (F+) ABC12-AC98.17%pos 129659 (R-) AC98.39%pos 91944 (F+) ABC12-&AC99.48%pos 148281 (F+) ABC12-AC100%pos 91512 (R-) AC99.86%pos 52830 (F+) ABC12-&AC100%pos 95059 (F+) ABC12-AC99.83%pos 104976 (R+) AC98.73%pos 144203 (F-) ABC12-AC98.57%pos 156363 (R-) &ABC12-AC100%pos 26940 (R+) AC100%pos 66478 (F-) ABC12-&AC100%pos 108443 (F+) ABC12-&AC99.14%pos 66521 (F-) ABC12-&AC99.7%pos 136024 (F-) ABC12-&AC100%pos 71785 (F+) ABC12-&AC99.56%pos 153489 (F+) ABC12-AC98.72%pos 93859 (R-) AC100%pos 52997 (F+) ABC12-AC100%pos 485 (R+) &ABC12-AC99.3%pos 53631 (R+) AC99.61%pos 94840 (F-) ABC12-AC99.4%pos 96533 (R+) AC99.82%pos 136022 (F-) ABC12-AC98.73%pos 34750 (R-) 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ERV3-16A3_I-int
ERV3-16A3_I-int
ERV3-16A3_I-int
MLT1A1-int
ERV3-16A3_I-int
MamRep1527
Low_complexity
Low_complexity
hAT-Charlie
MLT1H2-int
Low_complexity
Simple_repeat
Simple_repeat
Low_complexity
hAT-Tip100
Simple_repeat
Simple_repeat
hAT-Charlie
Simple_repeat
hAT-Charlie
Simple_repeat
Simple_repeat
hAT-Charlie
hAT-Charlie
Low_complexity
TcMar-Mariner
TcMar-Mariner
Low_complexity
hAT-Charlie
Low_complexity
hAT-Charlie
Low_complexity
HUERS-P2-int
HUERS-P2-int
HUERS-P2-int
HUERS-P2-int
HUERS-P2-int
HUERS-P2-int
tRNA-Glu-GAA
Low_complexity
Low_complexity
Simple_repeat
hAT-Charlie
ERVL-E-int
Low_complexity
hAT-Charlie
Simple_repeat
Low_complexity
Low_complexity
hAT-Blackjack
Low_complexity
Low_complexity
TcMar-Tigger
Low_complexity
hAT-Charlie
TcMar-Mariner
PRIMA4-int
Low_complexity
Simple_repeat
hAT-Tip100
hAT-Blackjack
hAT-Blackjack
hAT-Blackjack
hAT-Charlie
Low_complexity
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
hAT-Tip100
hAT-Blackjack
hAT-Charlie
hAT-Charlie
Low_complexity
TcMar-Tigger
Low_complexity
Simple_repeat
Low_complexity
Low_complexity
hAT-Charlie
Simple_repeat
Simple_repeat
TcMar-Tigger
Low_complexity
ERV3-16A3_I-int
TcMar-Tigger
TcMar-Tigger
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
hAT-Charlie
MamGypLTR1c
MamGypLTR1c
hAT-Charlie
Simple_repeat
hAT-Charlie
hAT-Charlie
hAT-Tip100
hAT-Tip100
hAT-Charlie
Low_complexity
hAT-Charlie
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
ERV3-16A3_I-int
ERV3-16A3_I-int
ERV3-16A3_I-int
MLT1A1-int