Acidobacteria-Bacteroidetes
dimensions ntax=96;
Pedobacter_sp_1_2_EU585748
A_3_3_3B_144_x
A_3_1_2B_21_x
B_1_7_1B_82_x
Bacteroidetes_bacterium_3B_2_GU117702
Unc_Acidobacteria_bacterium_356A_AY5717
B_1_7_1B_109_x
Unc_Hymenobacter_group_bacterium_KL_2_5
B_1_4_1B_103_x
Unc_Bacteroidetes_bacterium_LIM100_HM24
Unc_bacterium_FN421712
A_3_1_3B_107_x
Unc_Bacteroidetes_bacterium_F15_5A_FL_E
Dyadobacter_sp_BZ26_GQ131577
B_1_6_1B_98_x
B_1_7_1B_134_x
cher_4_2B_46_x
A_3_3_3B_142_x
A_2_1A_3B_66_x
Hymenobacter_sp_29F_AY647897
B_1_4_1B_99_x
cher_4_1B_25_x
cher_2_1B_28_x
Hymenobacter_daecheongensis_Dae14_EU370
B_1_7_1B_113_x
A_2_1A_3B_67_x
Unc_Acidobacteria_bacterium_500M1_D6_DQ
B_1_6_1B_83_x
Holophaga_foetida_X77215
RP_2_6_1B_32_x
Unc_soil_bacterium_TE12_DQ248286
B_1_4_1B_78_x
Unc_bacterium_FN421830
Unc_organism_DLE118_EF127622
Hymenobacter_sp_XTM003_EU382214
RP_2_6_1B_67_x
Bacteroides_fragilis_X83943
B_1_7_1B_115_x
B_1_4_1B_93_x
Unc_Acidobacteria_bacterium_500M1_C7_DQ
A_3_3_3B_100_x
Unc_bacterium_4_128_GU444118
B_1_6_1B_104_x
Bacterium_Ellin6075_AY234727
A_2_1A_3B_57_x
Unc_Bacteroidetes_bacterium_FM866274
Sphingobacterium_thalpophilum_M58779
Acidobacterium_capsulatum_D26171
Flavisolibacter_ginsengiterrae_Gsoil_49
Groundwater_biofilm_bacterium_S2_FJ2044
B_1_7_1B_119_x
B_1_6_1B_80_x
Unc_Hymenobacter_sp_LWM1_27_HQ674879
A_2_1a_2B_15_x
Edaphobacter_aggregans_DQ528761
B_1_6_1B_79_x
Unc_Acidobacteria_bacterium_352G_AY5717
Unc_Chitinophaga_sp_GL77_DQ130030
Hymenobacter_sp_tsz18_FJ979848
B_1_7_1B_75_x
Hymenobacter_sp_MJ1_AF449431
Flavobacterium_aquatile_M62797
Unc_Bacteroidetes_bacterium_DOL85_HM224
Unc_Acidobacteria_bacterium_partial_UMA
B_1_4_1B_90_x
B_1_6_1B_99_x
cher_4_2B_33_x
Chitinophaga_pinensis_CP001699
Unc_Acidobacteria_bacterium_351B_AY5717
Unc_bacterium_Hot_Creek_2_AY168735
Uncultured_bacterium_ncd529h08c1_JF0475
Unc_bacterium_ncd109e04c1_JF011138
Unc_soil_bacterium_M35_Pitesti_DQ378253
A_2_1a_2B_45_x
B_1_7_1B_58_x
A_2_1a_2B_36_x
Flexibacteraceae_bacterium_VUG_C4_EU159
Hymenobacter_soli_AB251884
Mucilaginibacter_sp_FB142_AM933506
A_3_3_3B_109_x
Leadbetterella_byssophila_4M15_AY854022
Pedobacter_GR12_04_partial_strain_AM279
Taxeobacter_sp_1N_12_EU379243
Bacteroidetes_bacterium_P3_DQ351728
A_3_1_3B_105_x
B_1_4_1B_117_x
Unc_bacterium_ncd_JF228213
Flexibacter_filiformis_AB078049
B_1_4_1B_120_x
cher_6_2B_69_x
Dyadobacter_sp_VTT_E_052912_EF093135
B_1_7_1B_99_x
B_1_6_1B_92_x
RP_1_5_1B_94_x
B_1_7_1B_81_x
Solibacter_usitatus_NC008536
tree [&r] tree_1 = (((((((((((((A_2_1A_3B_57_x:0.,A_2_1A_3B_67_x:0.)[&label=83.90140112,Unc_organism_DLE118_EF.)[&label=47..,A_2_1a_2B_45_x:0.)[&label=99..,((B_1_7_1B_81_x:0.,cher_4_1B_25_x:0.)[&label=33..,(Bacterium_Ellin6075_AY.,Unc_soil_bacterium_M35_Pitesti_DQ.)[&label=33..87309E-6)[&label=33..)[&label=78..,(Unc_Acidobacteria_bacterium_351B_AY021512,Unc_Acidobacteria_bacterium_partial_UMA:0.)[&label=97..)[&label=93.55516742,B_1_7_1B_115_x:6.)[&label=82..,B_1_4_1B_117_x:0.)[&label=91.4206351,Unc_Acidobacteria_bacterium_356A_AY503587)[&label=41..,(((((A_3_3_3B_109_x:4.,B_1_4_1B_78_x:0.)[&label=33..,(Unc_Acidobacteria_bacterium_500M1_C7_DQ:0.,Unc_Acidobacteria_bacterium_500M1_D6_DQ:0.)[&label=68..)[&label=78..,RP_2_6_1B_67_x:0.)[&label=68..,Unc_bacterium_ncd109e04c1_JF.)[&label=33..,((B_1_6_1B_104_x:0.,B_1_6_1B_80_x:1.)[&label=69..,(B_1_7_1B_119_x:2.,B_1_7_1B_82_x:0.)[&label=90..)[&label=51..)[&label=99.1568104)[&label=41..,(((A_3_3_3B_100_x:7.,Unc_soil_bacterium_TE12_DQ.)[&label=100]:0.,((A_3_3_3B_144_x:0.,Unc_bacterium_4_128_GU.)[&label=90..,B_1_4_1B_90_x:0.)[&label=81..)[&label=95..,Unc_Acidobacteria_bacterium_352G_AY519576)[&label=42.11280138)[&label=99..,(((Acidobacterium_capsulatum_D657463,Edaphobacter_aggregans_DQ.)[&label=99..,Solibacter_usitatus_NC.)[&label=66..,Holophaga_foetida_X19918)[&label=88..)[&label=100]:0.,(((((A_3_3_3B_142_x:0.,Flavisolibacter_ginsengiterrae_Gsoil_49:0.)[&label=99..,(Uncultured_bacterium_ncd529h08c1_JF061789,cher_4_2B_46_x:0.)[&label=89..)[&label=74..,(B_1_4_1B_120_x:0.,(B_1_4_1B_93_x:1.,Unc_Bacteroidetes_bacterium_LIM100_HM24:0.)[&label=89..)[&label=33..)[&label=100]:0.,(Chitinophaga_pinensis_CP.,Flexibacter_filiformis_AB.)[&label=98.495025)[&label=98..,((B_1_6_1B_98_x:0.,cher_4_2B_33_x:0.)[&label=98.8693749,Unc_Chitinophaga_sp_GL77_DQ.)[&label=57..)[&label=96..)[&label=67.6493102,(((((((((((A_2_1A_3B_66_x:0.,cher_6_2B_69_x:0.)[&label=78.73826153,A_2_1a_2B_36_x:0.)[&label=54..,(B_1_6_1B_83_x:0.,Unc_bacterium_ncd_JF.)[&label=76..)[&label=34..,cher_2_1B_28_x:0.)[&label=41.08180985,(B_1_4_1B_103_x:0.,Unc_Hymenobacter_group_bacterium_KL_2_5:0.)[&label=78..)[&label=98..,((((B_1_7_1B_113_x:0.,B_1_7_1B_99_x:0.)[&label=92..,(B_1_7_1B_134_x:7.,B_1_7_1B_58_x:0.0)[&label=33..)[&label=53..,(((Taxeobacter_sp_1N_12_EU.,Unc_bacterium_FN.)[&label=61..,Unc_Hymenobacter_sp_LWM1_27_HQ.)[&label=91.9244757,Unc_Bacteroidetes_bacterium_F15_5A_FL_E:0.)[&label=93..)[&label=66..,Unc_bacterium_FN.)[&label=100]:0.)[&label=73..,(((A_2_1a_2B_15_x:0.,Flexibacteraceae_bacterium_VUG_C4_EU159:0.)[&label=59..,((B_1_4_1B_99_x:0.,Hymenobacter_sp_tsz18_FJ.)[&label=88..,((B_1_6_1B_79_x:0.,Hymenobacter_soli_AB.)[&label=80..,(B_1_7_1B_109_x:5.,Hymenobacter_sp_MJ1_AF.)[&label=68..)[&label=75..)[&label=47..)[&label=96..,Bacteroidetes_bacterium_P3_DQ.)[&label=97..)[&label=53..,(B_1_6_1B_92_x:0.,Hymenobacter_sp_XTM003_EU.)[&label=99.3022095)[&label=61..,Hymenobacter_daecheongensis_Dae14_EU370:0.)[&label=100]:0.,(Groundwater_biofilm_bacterium_S2_FJ604956,Hymenobacter_sp_29F_AY.)[&label=77..)[&label=96..,(((((A_3_1_3B_105_x:0.,Pedobacter_sp_1_2_EU.)[&label=97..,(B_1_6_1B_99_x:0.,Pedobacter_GR12_04_partial_strain_AM279:0.)[&label=100]:0.)[&label=55..,(B_1_7_1B_75_x:0.,Mucilaginibacter_sp_FB142_AM.)[&label=99..)[&label=67..,Sphingobacterium_thalpophilum_M628773)[&label=99..,(Bacteroides_fragilis_X73892,Flavobacterium_aquatile_M81966)[&label=84..)[&label=96..)[&label=41..,((((A_3_1_2B_21_x:0.,Dyadobacter_sp_BZ26_GQ.)[&label=87..,Dyadobacter_sp_VTT_E_052912_EF.)[&label=100]:0.,(Leadbetterella_byssophila_4M15_AY.,(RP_1_5_1B_94_x:0.,Unc_bacterium_Hot_Creek_2_AY.)[&label=88..)[&label=100]:0.)[&label=96..,((A_3_1_3B_107_x:0.,((Bacteroidetes_bacterium_3B_2_GU.,Unc_Bacteroidetes_bacterium_DOL85_HM224:0.)[&label=51..,Unc_Bacteroidetes_bacterium_FM.)[&label=57..)[&label=52..,RP_2_6_1B_32_x:0.)[&label=85..)[&label=80..);
set appearance.backgroundColour=#-1;
set appearance.branchColorAttribute="User Selection";
set appearance.branchLineWidth=1.0;
set appearance.foregroundColour=#-;
set appearance.selectionColour=#-4925954;
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontSize=8.0;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set nodeBars.barWidth=4.0;
set nodeLabels.displayAttribute="label";
set nodeLabels.fontSize=7.0;
set nodeLabels.significantDigits=2;
set polarLayout.alignTipLabels=
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=0;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=
set scaleAxis.automaticScale=
set scaleAxis.fontSize=8.0;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=0.1;
set scaleAxis.minorTicks=0.05;
set scaleAxis.origin=0.0;
set scaleAxis.significantDigits=4;
set scaleBar.automaticScale=
set scaleBar.fontSize=7.0;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.0;
set scaleBar.significantDigits=4;
set tipLabels.displayAttribute="Taxon names";
set tipLabels.fontSize=8.0;
set tipLabels.significantDigits=4;
set trees.order=
set trees.orderType="increasing";
set trees.rooting=
set trees.rootingType="User Selection";
set trees.transform=
set trees.transformType="cladogram";
Cyanobacteria
dimensions ntax=95;
Unc_Chroococcidiopsis_sp_FJ805928
Petalonema_sp_ANT_GENTNER2_8_AY493624
A_3_3_3B_54_x
A_2_1a_2B_6_x
SG_A3_1_1C_43_x
A_3_3_3B_73_x
Thermosynechococcus_elongatus_BA000039
B_1_3_1B_71_x
Truepera_radiovictrix_TU_8_DQ022077
Anabaena_variabilis_KCTCAG10064_DQ23482
A_2_4B_2B_15_x
A_3_1_3B_118_x
Rivularia_atra_BIRMGR1_AM230675
B_1_6_1B_108_x
Leptolyngbya_sp_LLi18__DQ786166
Unc_cyanobacterium_B107212D_HQ189094
Nostoc_commune_M13_AB088405
SG_A2_1a_1C_17_petalonema_com
Cyanobacterium_OU_20_GQ162224
Coleodesmium_sp_ANTLH52B5_AY493596
SG_A2_4b_1C_33_x
Myxosarcina_sp_PCC7325_AJ344562
Leptolyngbya_badia_CRS_1_operon_3_EF429
Unc_Chroococcidiopsis_sp_AR2_1_FJ805854
Prochlorococcus_marinus_NATL2A_CP000095
A_3_1_2B_2_x
A_2_1a_2B_1_x
Pleurocapsa_minor_SAG4_99_AJ344564
SG_A3_1_1C_45_x
A_2_3_2B_46_x
Unc_bacterium_JSC2_A6_DQ532167
Unc_cyanobacterium_D1E09_EU753646
Microcystis_aeruginosa_SPC777_EF121241
Gloeocapsa_sp_PCC73106_AB039000
SG_A3_3_1C_62_chroococcale_com
Gloeobacter_violaceus_AF132791
B_1_3_1B_81_x
B_1_6_1B_88_x
Pseudophormidium_sp_ANT_GENTNER2_1_AY49
A_2_1A_3B_65_x
Unc_cyanobacterium_AN2_3_FJ805912
Dermocarpella_incrassata_PCC7326_AJ3445
Tolypothrix_sp_FJ660999
Unc_Deinococcus_sp_AV_8S_B11_EU341277
RP_2_6_1B_24_x
SG_A3_3_1C_28_x
SG_A2_1a_1C_5_x_com
SG_A3_3_1C_4_x
Pleurocapsa_sp_CALU_1126_DQ293994
Deinococcus_radiophilus_Y11333
B_1_3_1B_72_x
A_2_1A_3B_59_x
B_1_7_1B_98_x
Loriellopsis_cavernicola_HM748318
A_3_1_3B_63_x
A_2_4B_2B_24_x
Gloeotrichia_echinulata_URA3_AM230705
A_3_1_2B_47_x
Thermus_thermophilus_X07998
Leptolyngbya_frigida_ANT_LH52B3_AY49361
SG_A3_3_1C_10_x
Unc_cyanobacterium_DOL63_HM224428
Unc_bacterium_AKIW875_DQ129342
Unc_bacterium_JSC8_C11_DQ532230
Gloeothece_sp_KO68DGAs_AB067580
Unc_cyanobacterium_500M2_C2_DQ514209
Chroococcus_sp_JJCM_ChrooM_AM710384
RP_2_6_1B_91_x
Unc_endolithic_bacterium_AB473897
B_1_7_1B_78_x
SG_A3_3_1C_55_x
Calothrix_desertica_PCC7102_AF132779
Leptolyngbya_appalachiana_EF429286
Leptolyngbya_sp_FI5_2HA3_HM018684
Chroococcidiopsis_sp_SAG_2025_AM709635
A_3_3_3B_139_x
Unc_endolithic_bacterium_AB374378
A_2_1A_3B_96_x
Unicellular_cyanobacterium_LLi67_DQ7861
SG_A3_1_1C_7_x
Chroococcidiopsis_sp_CC1_DQ914863
A_2_4B_2B_2_x
Rivularia_sp_MU24_UAM_305_EU009149
Deinococcus_100M2_A8_DQ514091
Chroococcus_sp_2T05h_FR798926
Unc_Deinococcus_sp_20E7_DQ366013
'Cyanobium_sp._JJ25_2_AM710370'
bacterium_BF_AM697579
Unc_cyanobacterium_EPLS031_EF522220
Unc_bacterium_AK4AB1_05A_GQ396895
Phormidium_priestleyi_ANTLG24_AY493580
Unc_bacterium_agateC22_FJ230787
Chroococcidiopsis_thermalis_PCC7203_AB0
A_3_3_3B_137_x
'Unc_Deinococcus_sp._J34H5_DQ366015'
(((((((A_2_1A_3B_59_x:0.,bacterium_BF_AM.)33..,((A_2_1a_2B_6_x:0.,B_1_6_1B_108_x:0.)33..,Unc_Deinococcus_sp_AV_8S_B11_EU.)98..)68..,(((((((A_2_3_2B_46_x:1.,B_1_3_1B_71_x:0.)97..,((A_2_4B_2B_24_x:0.,((A_3_3_3B_137_x:0.,(B_1_3_1B_72_x:0,Deinococcus_100M2_A8_DQ)33..)33..,A_3_3_3B_139_x:0.)81...,(RP_2_6_1B_24_x:0,Unc_endolithic_bacterium_AB)97..)33..)68..,(A_3_1_3B_118_x:0,Unc_bacterium_AKIW875_DQ)98....,Unc_Deinococcus_sp._J34H5_DQ...,Unc_Deinococcus_sp_20E7_DQ.)97..,Unc_endolithic_bacterium_AB.)33..,((A_3_1_3B_63_x:2.,B_1_3_1B_81_x:0.)66..,A_3_3_3B_54_x:0.)77..)93..545:0.,Truepera_radiovictrix_TU_8_DQ...1694684,(Deinococcus_radiodurans_M584199,Deinococcus_radiophilus_Y....,Thermus_thermophilus_X.,((((((((((A_2_1A_3B_65_x:0.,(A_2_1A_3B_96_x:0,Unc_cyanobacterium_DOL63_HM)33..)78..,(Unc_Chroococcidiopsis_sp_AR2_1_FJ.,Unc_cyanobacterium_EPLS031_EF.)33..)93..,Loriellopsis_cavernicola_HM...,(SG_A2_1a_1C_17_petalonema_com:0.,SG_A2_1a_1C_5_x_com:0.....,Chroococcidiopsis_sp_CC1_DQ...,((Chroococcidiopsis_sp_SAG_2025_AM.,Chroococcidiopsis_thermalis_PCC7203_AB0:0.:0.,(SG_A3_3_1C_10_x:0.,(SG_A3_3_1C_4_x:0,SG_A3_3_1C_55_x:4.)47..)92......0209928,((((((Anabaena_variabilis_KCTCAG10064_DQ8326168,(Nostoc_commune_M13_AB.,Petalonema_sp_ANT_GENTNER2_8_AY.....,Tolypothrix_sp_FJ.)41..,(((((B_1_7_1B_78_x:0.,Unc_bacterium_JSC8_C11_DQ.)92..,Unc_cyanobacterium_D1E09_EU...,(B_1_7_1B_98_x:0.,(Coleodesmium_sp_ANTLH52B5_AY.,Unc_cyanobacterium_B107212D_HQ.......,Gloeotrichia_echinulata_URA3_AM...,Rivularia_atra_BIRMGR1_AM....155184,(Calothrix_desertica_PCC7102_AF.,Rivularia_sp_MU24_UAM_305_EU.....,((((((Chroococcus_sp_2T05h_FR.,SG_A3_3_1C_62_chroococcale_com:0.)83..,Chroococcus_sp_JJCM_ChrooM_AM...,Microcystis_aeruginosa_SPC777_EF...,Gloeothece_sp_KO68DGAs_AB...,((((Dermocarpella_incrassata_PCC7326_AJ722911,((Pleurocapsa_minor_SAG4_99_AJ.,Pleurocapsa_sp_CALU_1126_DQ.)52..,SG_A2_4b_1C_33_x:0.....,Myxosarcina_sp_PCC7325_AJ...,Unicellular_cyanobacterium_LLi67_DQ..,Gloeocapsa_sp_PCC73106_AB...)77..,Cyanobacterium_OU_20_GQ....,((((RP_2_6_1B_91_x:0.,(SG_A3_1_1C_7_x:0.,Unc_bacterium_AK4AB1_05A_GQ...)66..,Unc_bacterium_JSC2_A6_DQ.)33..,Unc_cyanobacterium_500M2_C2_DQ...,Unc_Chroococcidiopsis_sp_FJ...)37..)95..,((((Leptolyngbya_frigida_ANT_LH52B3_AY64e-06,Unc_cyanobacterium_AN2_3_FJ...,SG_A3_3_1C_28_x:0...,Unc_bacterium_agateC22_FJ...,Leptolyngbya_sp_LLi18__DQ....,((A_3_3_3B_73_x:0.,(((B_1_6_1B_88_x:0.,Phormidium_priestleyi_ANTLG24_AY.)96..,Pseudophormidium_sp_ANT_GENTNER2_1_AY49:0...,Leptolyngbya_appalachiana_EF.....,(Leptolyngbya_badia_CRS_1_operon_3_EF429:0.,(Leptolyngbya_sp_FI5_2HA3_HM.,(SG_A3_1_1C_43_x:0.,SG_A3_1_1C_45_x:0)56..)94......)85..,((Cyanobium_sp._JJ25_2_AM.,Prochlorococcus_marinus_NATL2A_CP.0:0.,Thermosynechococcus_elongatus_BA.....,Gloeobacter_violaceus_AF.);
set appearance.backgroundColour=#-1;
set appearance.branchColorAttribute="User Selection";
set appearance.branchLineWidth=1.0;
set appearance.foregroundColour=#-;
set appearance.selectionColour=#-4925954;
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontSize=8.0;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set nodeBars.barWidth=3.0;
set nodeLabels.displayAttribute="Node ages";
set nodeLabels.fontSize=7.0;
set nodeLabels.significantDigits=2;
set polarLayout.alignTipLabels=
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=100;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=
set scaleAxis.automaticScale=
set scaleAxis.fontSize=8.0;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=0.1;
set scaleAxis.minorTicks=0.05;
set scaleAxis.origin=0.0;
set scaleAxis.significantDigits=4;
set scaleBar.automaticScale=
set scaleBar.fontSize=6.0;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.0;
set scaleBar.significantDigits=4;
set tipLabels.displayAttribute="Taxon names";
set tipLabels.fontSize=8.0;
set tipLabels.significantDigits=2;
set trees.order=
set trees.orderType="increasing";
set trees.rooting=
set trees.rootingType="User Selection";
set trees.transform=
set trees.transformType="cladogram";
Proteobacteria
dimensions ntax=134;
RP_1_5_1B_192_x
B_1_6_1B_94_x
A_3_3_3B_134_x
A_3_1_3B_41_x
Massilia_aurea_AM231588
Methylobacterium_iners_5317S_33_EF17449
Sphingomonas_sp_II_Gauze_W_12_8_FJ26757
RP_1_5_1B_24_x
Rhizobium_tropici_D11344
RP_2_6_1B_14_x
Sphingomonas_sp_Tibet_YD4600_2_FJ958329
Methylococcus_capsulatus_X72770
B_1_7_1B_64_x
B_1_7_1B_67_x
Unc_alpha_proteobacterium_SM1E02_AF4456
B_1_4_1B_126_x
A_2_4B_2B_12_x
A_3_1_2B_4_x
Methylobacterium_sp_B25a_EU240206
Belnapia_moabensis_AJ871428
Sphingomonas_sp_SIA181_1A1_AF395032
Rhodospirillum_rubrum_D30778
Methylosinus_trichosporium_M29024
A_2_4B_2B_49_x
Unc_bacterium_AM697063
Roseomonas_gilardiiE9464_AY150051
A_3_3_3B_129_x
Sphingomonas_sp_BH3_FJ834325
Caulobacter_fusiformis_AJ227759
A_2_4B_2B_45_x
Roseomonas_sp_BZ31r_HQ588841
Polaromonas_sp_C2f_for_AB552890
Variovorax_paradoxus_CAI_26_DQ257419
Nitrosospira_multiformis_L35509
Unc_Delftia_sp_GI5_007_A04_FJ192759
A_3_3_3B_117_x
Unc_bacterium_FM874262
Unc_Delftia_sp_GI5_14_E04_FJ192512
Unc_Herbaspirillum_sp_GI8_sp_C04_GQ1298
Unc_alpha_proteobacterium_AB257634
Unc_soil_bacterium_UE4_DQ248235
Methylibium_fulvum_AB245356
Roseomonas_sp_T104_41_HM204475
A_2_1A_3B_102_x
Sphingomonas_dokdonensis_strain_2P01AE_
B_1_6_1B_63_x
Unc_Caulobacter_sp_ENR01_FJ536909
Sphingomonas_sp_V29_for_AB534590
B_1_4_1B_61_x
Rhodobacter_sphaeroides_X53853
Aeromonas_salmonicida_AJ009859
Herbaspirillum_sp_1P10PA_EU977753
cher_2_1B_9_x
A_3_1_2B_19_x
Azospirillum_sp_AP_500_AM743175
RP_1_5_1B_122_x
Unc_bacterium_FM872739
RP_2_6_1B_30_x
A_2_4B_2B_41_x
Burkholderia_glathei_U96935
Unc_beta_proteobacterium_AKYG464_AY9220
B_1_4_1B_72_x
Unc_alpha_proteobacterium_WB1B012_AY862
Skermanella_aerolata_5416T_32_DQ672568
B_1_4_1B_111_x
Hydrogenophilus_thermoluteolus_AB009828
A_3_1_3B_31_x
Delftia_tsuruhatensis_WXZ_1_EF440614
Sphingomonas_sp_JSM_083058_FJ527417
Oxalobacter_sp_HI_D2_DQ196473
Methylophilus_methylotrophus_M29021
Bradyrhizobium_japonicum_S46916
S_sonnei_X96964
Phenylobacterium_lituiforme_NR_029117
cher_4_1B_41_x
Duganella_sp_BD_a14_EF575562
cher_2_1B_19_x
Pseudomonas_fluorescens_D84013
B_1_4_1B_49_x
Unc_Sphingomonas_sp_DOL43_HM224424
Unc_beta_proteobacterium_partial_UMAB_c
B_1_6_1B_115_x
RP_1_5_1B_31_x
A_3_1_2B_20_x
A_3_3_3B_113_x
Uncultured_Sphingomonas_LIM106_HM241119
A_2_1A_3B_117_x
A_3_3_3B_89_x
Unc_bacterium_GI3_M_9_D01_FJ191653
Sphingomonadaceae_bacterium_PB125_for_s
A_2_1a_2B_11_x
Xanthomonas_campestris_X95917
A_3_1_3B_59_x
Sphingomonas_sp_LnR5_44_EU332828
Unc_Methylocella_sp_MWM1_39_HQ674799
Comamonadaceae_bacterium_P1D3_partial_s
Unc_Granulicatella_sp_EHFS1_S03e_EU0714
Unc_Acetobacteraceae_bacterium_KL_2_4_8
Sphingomonas_sp_Enf55_DQ339616
Hyphomicrobium_zavarzinii_Y14305
A_2_1A_3B_109_x
A_3_3_3B_82_x
Acetobacter_oboediens_AJ001631
B_1_7_1B_131_x
Unc_bacterium_Ni_B10_DMDN_EU150282
Antarctic_bacterium_GA0L_EU636046
Unc_bacterium_AK4AB2_06A_GQ396931
RP_1_5_1B_182_x
RP_1_5_1B_58_x
Sphingomonas_sp_Ellin169_AF409011
RP_1_5_1B_56_x
Unc_bacterium_AM697235
Devosia_albogilva_IPL15_EF433460
RP_1_5_1B_21_x
Roseomonas_aquatica_AM231587
Unc_alpha_proteobacterium_for_Dolo_04_A
Unc_bacterium_FN421676
Oxalobacter_formigenes_U49757
RP_2_6_1B_39_x
Sphingomonas_japonica_for_strain_KC7_AB
Beta_proteobacterium_TEGF007_AB426585
Sphingomonadaceae_bacterium_NAMAF005_AB
Unc_endolithic_bacterium_AB374374
B_1_7_1B_96_x
Comamonas_sp__AJ002803
RP_1_5_1B_65_x
Devosia_sp_6_4V_EF540476
A_3_3_3B_121_x
B_1_4_1B_60_x
Rhodobacteraceae_bacterium_CC_SBABM117_
Roseomonas_frigidaquae_CW67_EU290160
A_3_3_3B_122_x
B_1_4_1B_114_x
Prosthecomicrobium_sp_ATCC_27835_GQ2217
tree [&r] tree_1 = ((((((A_2_1A_3B_102_x:0.,cher_4_1B_41_x:0.)[&label=91..,Uncultured_Sphingomonas_LIM106_HM.)[&label=84..,Sphingomonas_sp_BH3_FJ.)[&label=57..,(((((((A_2_4B_2B_41_x:0.,Unc_Sphingomonas_sp_DOL43_HM.)[&label=88..,(((A_3_1_3B_59_x:0.,Sphingomonas_japonica_for_strain_KC7_AB:0.)[&label=99..,(A_3_3_3B_129_x:0.,((B_1_6_1B_94_x:0.,(((RP_1_5_1B_58_x:0.0,Unc_bacterium_FN.)[&label=97..,Sphingomonas_sp_Enf55_DQ.)[&label=99..,Sphingomonas_sp_II_Gauze_W_12_8_FJ843E-5)[&label=37..)[&label=99..,Sphingomonas_dokdonensis_strain_2P01AE_:0.)[&label=91..)[&label=82..)[&label=74..,Sphingomonas_sp_Ellin169_AF.)[&label=68..)[&label=65.0941934,((((B_1_4_1B_72_x:0.,Sphingomonas_sp_V29_for_AB.)[&label=85..,B_1_7_1B_131_x:0.)[&label=80..,Unc_Granulicatella_sp_EHFS1_S03e_EU3699288)[&label=65..,Sphingomonadaceae_bacterium_NAMAF005_AB:0.)[&label=91..)[&label=86..,Sphingomonas_sp_JSM_083058_FJ.)[&label=82..,((((A_2_4B_2B_49_x:0.,Unc_alpha_proteobacterium_AB.)[&label=78..,A_3_3_3B_82_x:0.)[&label=98.2875401,Sphingomonas_sp_Tibet_YD4600_2_FJ.)[&label=87..,(A_3_1_3B_41_x:0.,Sphingomonas_sp_LnR5_44_EU.)[&label=73..)[&label=64..)[&label=65..,Unc_Caulobacter_sp_ENR01_FJ.)[&label=74..,(((B_1_7_1B_64_x:0.,Sphingomonas_sp_SIA181_1A1_AF.)[&label=89..,Sphingomonadaceae_bacterium_PB125_for_s:0.)[&label=70..,(RP_2_6_1B_39_x:9.,Unc_bacterium_AM.)[&label=100]:0.)[&label=99..)[&label=82..)[&label=100]:0.,((A_3_3_3B_117_x:0.,Caulobacter_fusiformis_AJ.)[&label=92..,Phenylobacterium_lituiforme_NR_.)[&label=100]:0.)[&label=37..,((((((((((((A_2_1A_3B_109_x:0.,cher_2_1B_9_x:0.0)[&label=33..,Unc_Herbaspirillum_sp_GI8_sp_C04_GQ7342829)[&label=72..,(B_1_4_1B_60_x:0.,Herbaspirillum_sp_1P10PA_EU.)[&label=56..)[&label=92..,((((A_3_1_2B_20_x:0.,(Massilia_aurea_AM.,Oxalobacter_sp_HI_D2_DQ.)[&label=46..)[&label=98..,(A_3_3_3B_113_x:0.,Duganella_sp_BD_a14_EF.)[&label=92..)[&label=100]:0.,Beta_proteobacterium_TEGF007_AB.)[&label=79.10342807,(Antarctic_bacterium_GA0L_EU.,RP_2_6_1B_30_x:0.)[&label=95..)[&label=97..)[&label=75..,Oxalobacter_formigenes_U877855)[&label=99..,(((((((A_3_3_3B_122_x:0.,Comamonadaceae_bacterium_P1D3_partial_s:0.)[&label=98..,Variovorax_paradoxus_CAI_26_DQ.)[&label=96..,(B_1_4_1B_49_x:0.,Polaromonas_sp_C2f_for_AB.)[&label=97..)[&label=83..,((Comamonas_sp__AJ.0,((Delftia_tsuruhatensis_WXZ_1_EF.,Unc_Delftia_sp_GI5_007_A04_FJ.)[&label=77..,RP_1_5_1B_56_x:0.)[&label=33..)[&label=33..,((((RP_1_5_1B_192_x:0.,Unc_soil_bacterium_UE4_DQ.)[&label=67..,Unc_bacterium_GI3_M_9_D01_FJ.)[&label=100]:0.,Unc_Delftia_sp_GI5_14_E04_FJ.)[&label=99..,RP_1_5_1B_31_x:0.)[&label=55..)[&label=99..)[&label=99..,((B_1_4_1B_61_x:0.,Unc_bacterium_Ni_B10_DMDN_EU.)[&label=57..,Methylibium_fulvum_AB.)[&label=94..)[&label=100]:0.,(A_3_3_3B_89_x:0.,Unc_beta_proteobacterium_AKYG464_AY089608)[&label=100]:0.)[&label=59..,((B_1_4_1B_111_x:0.,Unc_beta_proteobacterium_partial_UMAB_c:0.)[&label=99..,Burkholderia_glathei_U367697)[&label=63..)[&label=98.8499497)[&label=85..,Hydrogenophilus_thermoluteolus_AB.)[&label=93..,Nitrosospira_multiformis_L08698)[&label=98..,Methylophilus_methylotrophus_M12262)[&label=100]:0.,Xanthomonas_campestris_X18383)[&label=71..,(((Aeromonas_salmonicida_AJ.,(((RP_1_5_1B_182_x:0.,RP_1_5_1B_24_x:0.)[&label=33..,RP_1_5_1B_65_x:0.)[&label=47..,S_sonnei_X)[&label=100]:0.)[&label=100]:0.,Pseudomonas_fluorescens_D96154)[&label=57..,Methylococcus_capsulatus_X783503)[&label=90..)[&label=100]:0.,((((((((((((A_2_1A_3B_117_x:0.,Roseomonas_sp_T104_41_HM.0)[&label=33..,B_1_6_1B_115_x:0.)[&label=67..,Roseomonas_sp_BZ31r_HQ.)[&label=71..,RP_1_5_1B_122_x:0.)[&label=45..,Unc_Acetobacteraceae_bacterium_KL_2_4_8:0.)[&label=61..,B_1_6_1B_63_x:0.)[&label=99..,(A_3_1_3B_31_x:0.,Roseomonas_frigidaquae_CW67_EU.)[&label=100]:0.)[&label=78..,Belnapia_moabensis_AJ.)[&label=65..,(((A_2_1a_2B_11_x:0.,Unc_bacterium_FM.)[&label=99..,Roseomonas_gilardiiE9464_AY.)[&label=97..,(Roseomonas_aquatica_AM.0,cher_2_1B_19_x:0.0)[&label=100]:0.)[&label=85..)[&label=97..,Acetobacter_oboediens_AJ.)[&label=100]:0.,((A_2_4B_2B_12_x:0.,(A_3_1_2B_19_x:0.,Skermanella_aerolata_5416T_32_DQ.)[&label=33..)[&label=74..,Azospirillum_sp_AP_500_AM.)[&label=99.9772384)[&label=79..,Rhodospirillum_rubrum_D87953)[&label=69..)[&label=96..,((((((((((A_2_4B_2B_45_x:0.,A_3_1_2B_4_x:0.)[&label=86..,Unc_alpha_proteobacterium_SM1E02_AF3201018)[&label=98..,Devosia_sp_6_4V_EF.)[&label=99..,Devosia_albogilva_IPL15_EF.)[&label=90..,A_3_3_3B_134_x:0.)[&label=99..,Unc_bacterium_FM.)[&label=52..,Rhizobium_tropici_D57943)[&label=60..,Rhodobacter_sphaeroides_X97415)[&label=70..,(A_3_3_3B_121_x:0.,Unc_alpha_proteobacterium_for_Dolo_04_A:0.)[&label=100]:0.)[&label=84..,((((((((((B_1_4_1B_114_x:4.,Methylobacterium_sp_B25a_EU.)[&label=88..,(B_1_4_1B_126_x:0.,Unc_bacterium_AM.)[&label=100]:0.)[&label=81..,(Methylobacterium_iners_5317S_33_EF8772271,(RP_1_5_1B_21_x:0.,Unc_bacterium_AK4AB2_06A_GQ.)[&label=81..)[&label=50..)[&label=99..,(B_1_7_1B_67_x:0.,Unc_alpha_proteobacterium_WB1B012_AY862:0.)[&label=56..)[&label=99..,Bradyrhizobium_japonicum_S989053)[&label=63..,(RP_2_6_1B_14_x:0.,Unc_endolithic_bacterium_AB.)[&label=100]:0.)[&label=94..,((B_1_7_1B_96_x:0.,Unc_Methylocella_sp_MWM1_39_HQ.)[&label=98..,Methylosinus_trichosporium_M3146)[&label=43..)[&label=95..,Rhodobacteraceae_bacterium_CC_SBABM117_:0.)[&label=87..,Prosthecomicrobium_sp_ATCC_27835_GQ558604)[&label=80..,Hyphomicrobium_zavarzinii_Y51541)[&label=84..)[&label=59..);
set appearance.backgroundColour=#-1;
set appearance.branchColorAttribute="User Selection";
set appearance.branchLineWidth=1.0;
set appearance.foregroundColour=#-;
set appearance.selectionColour=#-4925954;
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontSize=8.0;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set nodeBars.barWidth=4.0;
set nodeLabels.displayAttribute="label";
set nodeLabels.fontSize=7.0;
set nodeLabels.significantDigits=2;
set polarLayout.alignTipLabels=
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=0;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=
set scaleAxis.automaticScale=
set scaleAxis.fontSize=8.0;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=0.1;
set scaleAxis.minorTicks=0.05;
set scaleAxis.origin=0.0;
set scaleAxis.significantDigits=4;
set scaleBar.automaticScale=
set scaleBar.fontSize=7.0;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.07;
set scaleBar.significantDigits=4;
set tipLabels.displayAttribute="Taxon names";
set tipLabels.fontSize=8.0;
set tipLabels.significantDigits=2;
set trees.order=
set trees.orderType="increasing";
set trees.rooting=
set trees.rootingType="User Selection";
set trees.transform=
set trees.transformType="cladogram";
Actinobacteria
dimensions ntax=149;
B_1_6_1B_93_x
Unc_bacterium_ncd_JF171627
Marmoricola_sp_BAC242_EU180564
A_2_4B_2B_5_x
Lapillicoccus_jejuensis_AM398397
A_2_4B_3B_169_x
Kineococcus_sp_1P02MC_EU977818
A_3_1_3B_40_x
A_3_3_3B_58_x
A_2_4B_3B_132_x
Unc_bacterium_2_9A_EU289511
actinobacterium_FBP460_AY250884
A_2_1A_3B_101_x
Unc_bacterium_G11_SB3A_FJ592818
Unc_bacterium_1_1E_EU289419
A_3_1_3B_116_x
A_3_3_3B_125_x
Unc_actinobacterium_E1B_A4_114_EF016798
A_2_4B_3B_3_x
A_3_1_2B_38_x
B_1_4_1B_105_x
Curtobacterium_flaccumfaciens_strain_2P
Unc_rubrobacter_sp_354H_AY571811
A_2_1A_3B_64_x
A_2_4B_3B_4_x
Frankiaceae_isolate_G10Namibia_X92365
B_1_3_1B_55_x
A_2_4B_3B_36_x
A_2_1A_3B_116_x
A_2_3_2B_45_x
Rubrobacter_xylanophilus_X87135
B_1_6_1B_128_x
A_3_1_3B_98_x
Unc_actinobacterium_partial_UMAB_cl_13_
Unc_bacterium_partial_isolate_BF0001B03
Geodermatophilus_sp_X92364
A_3_3_3B_91_x
B_1_4_1B_80_x
Phycicoccus_dokdonensis_strain_DS_8_EF5
B_1_4_1B_68_x
Actinotelluria_brasiliensis_Tu6233_x
B_1_4_1B_69_x
Micrococcineae_bacterium_4_C16_66_EF540
Nocardia_asteroides_Z36934
Solirubrobacter_soli_AB245334
Humicoccus_sp_KCTC_19426_EU939310
Kineosporia_aurantiaca_X87110
A_3_1_3B_78_x
A_2_1A_3B_97_x
RP_2_6_1B_121_x
A_2_4B_3B_125_x
Unc_bacterium_AM697139
Modestobacter_sp_BMG5755_FJ966173
Rathayibacter_iranicus_strain_ICPB70005
Phycicoccus_aerophilum_strain_5516T_20_
A_3_1_3B_61_x
Unc_actinobacterium_Fl_1F_C10_EF220492
Pseudonocardia_sp_TFS_1235_EF216360
Unc_actinobacterium_E1B_D2_114_EF016816
B_1_7_1B_110_x
Demetria_terragena_strain_HK1_0089_NR02
Actinomycetales_str_Ellin143_AF408985
Blastococcus_sp_OS1_29_partial_strain_O
RP_1_5_1B_140_x
Solirubrobacter_sp_Gsoil_917_AB245335
Rubrobacter_radiotolerans_strain_P_1_co
Arthrobacter_sp_D42008_FJ535483
Frankia_sp_strain_AVN17s_L40613
A_3_3_3B_110_x
A_3_3_3B_51_x
Nocardioides_plantarum_X69973
Pseudonocardia_sp_RI44_RCaA106_for_AB54
Geodermatophilaceae_bacterium_CIBE_G12_
Unc_bacterium_partial_A8_AM746686
A_2_1a_2B_9_x
Blastococcus_aggregatus_AJ430193
A_2_1A_3B_84_x
A_2_4B_3B_139_x
B_1_4_1B_73_x
Pseudonocardia_sp_MN08_A0270_for_AB5216
Pseudonocardia_sp_YIM_63233_FJ817379
B_1_7_1B_118_x
Unc_bacterium_FM872640
RP_1_5_1B_101_x
B_1_4_1B_104_x
A_3_3_3B_68_x
Blastococcus_sp_CNJ868_PL04_DQ448697
B_1_6_1B_73_x
A_2_1A_3B_119_x
Humicoccus_flavidus_DQ321750
Unc_actinobacterium_FBP218_AY250865
Unc_actinobacterium_UMAB_cl_68_FN811252
Rubrobacter_taiwanensis_LS_293_AF465803
Marmoricola_sp_Sco_A36_FN386723
Blastococcus_sp_YIM_68236_GQ494034
Pseudonocardia_petroleophila_strain_IMS
Rubrobacteridae_bacterium_Gsoil_1167_fo
B_1_7_1B_62_x
Unc_actinobacterium_partial_Sliv_136_FM
A_3_3_3B_105_x
Conexibacter_woesei_NR_028979
A_3_1_3B_70_x
A_2_1A_3B_98_x
A_3_1_3B_67_x
Unc_actinobacterium_E1B_B11_114_EF01680
Unc_bacterium_ncd_JF171716
B_1_6_1B_77_x
Amycolatopsis_sp_232068_GU130127
Arthrobacter_sp_210_41_GQ199743
Patulibacter_sp_P4_5_EU710748
Actinobacteria_from_anoxic_bulk_soil_x
A_2_3_2B_44_x
A_2_1A_3B_58_x
A_2_4B_3B_57_x
A_3_3_3B_118_x
A_2_4B_3B_55_x
Frigoribacterium_sp_NMC14_GU321353
Marmoricola_aequoreus_partial_type_stra
Unc_Microbacteriaceae_bacterium_B04_04A
Frankiaceae_bacterium_KVD_unk_16_DQ4904
Pseudonocardia_hydrocarbonoxydans_strai
Unc_bacterium_AKIW658_DQ129587
Actinomycetales_bacterium_Gsoil_1632_fo
B_1_3_1B_58_x
Frigoribacterium_sp_Enf57_DQ339618
bacterium_DRV_B001_AY923078
A_3_1_3B_45_x
B_1_4_1B_92_x
Unc_actinobacterium_partial_UMAB_cl_47_
Clavibacter_sp_Ens76_DQ339594
A_2_1A_3B_33_x
Cellulomonas_chitinilytica_AB268586
Actinobacterium_P23_DQ351736
Unc_actinobacterium_partial_Sliv_78_FM8
B_1_4_1B_109_x
Pseudonocardia_alaniniphila_FR733722
B_1_3_1B_79_x
A_2_4B_3B_31_x
Blastococcus_saxobsidens_FN600641
Arthrobacter_sp_VTT_E_EF093123
Unc_bacterium_ncd_JF116511
Marmoricola_aurantiacus_Y18629
Antarctic_bacterium_R_8287_partial_stra
Amycolatopsis_sp_13676C_EU741234
B_1_4_1B_62_x
Mycobacterium_chlorophenolicum_X79094
Unc_actinobacterium_partial_UMAB_cl_46_
A_3_1_3B_120_x
A_3_3_3B_99_x
tree [&r] tree_1 = (((((((((((A_2_1A_3B_101_x:0.,Unc_actinobacterium_FBP218_AY.)[&label=83..,Unc_bacterium_partial_isolate_BF.)[&label=81..,(A_3_1_3B_120_x:0.,Unc_bacterium_G11_SB3A_FJ.)[&label=88..)[&label=88..,Actinomycetales_str_Ellin143_AF.)[&label=33..,((B_1_7_1B_118_x:0.,Frankia_sp_strain_AVN17s_L340324)[&label=67..,Frankiaceae_bacterium_KVD_unk_16_DQ283442)[&label=73.3776478)[&label=85..,(((((((A_2_1A_3B_58_x:0.,B_1_6_1B_93_x:0.0)[&label=33..,A_3_1_3B_45_x:0.)[&label=77..,(A_2_1A_3B_84_x:0.,(Unc_actinobacterium_E1B_A4_114_EF.,actinobacterium_FBP460_AY.)[&label=33..)[&label=34..)[&label=33..,Unc_actinobacterium_E1B_B11_114_EF8087361)[&label=81..,A_2_4B_3B_31_x:0.)[&label=64..,(((B_1_6_1B_73_x:0.,RP_2_6_1B_121_x:0.0)[&label=85..,Unc_actinobacterium_partial_Sliv_78_FM8:0.)[&label=96..,Unc_bacterium_AM.)[&label=68.77525977)[&label=99..,Unc_actinobacterium_UMAB_cl_68_FN.)[&label=38..)[&label=76..,((((((((((A_2_4B_3B_132_x:0.,(A_3_1_3B_116_x:0.,Blastococcus_sp_OS1_29_partial_strain_O:0.)[&label=47..)[&label=40..,Unc_bacterium_FM.)[&label=33..,((Blastococcus_aggregatus_AJ.,RP_1_5_1B_101_x:0.)[&label=33..,Geodermatophilus_sp_X7810301)[&label=85.9776271)[&label=100]:0.,Blastococcus_saxobsidens_FN.)[&label=33..,Geodermatophilaceae_bacterium_CIBE_G12_:3.)[&label=90..,Blastococcus_sp_CNJ868_PL04_DQ.)[&label=57..,(Actinotelluria_brasiliensis_Tu6233_x:0.,Blastococcus_sp_YIM_68236_GQ.)[&label=83..)[&label=63..,Modestobacter_sp_BMG5755_FJ.)[&label=33..,A_2_4B_3B_139_x:0.)[&label=95..,A_3_3_3B_68_x:0.)[&label=61..)[&label=96..,Actinomycetales_bacterium_Gsoil_1632_fo:0.)[&label=79..,((((((A_2_1A_3B_116_x:0.,(B_1_6_1B_77_x:0.,Unc_actinobacterium_partial_UMAB_cl_46_:0.)[&label=52..)[&label=94..,(((((A_2_1A_3B_119_x:0.,Unc_bacterium_partial_A8_AM.)[&label=71..,Rubrobacter_radiotolerans_strain_P_1_co:0.)[&label=100]:0.,((A_3_1_3B_40_x:0.,Unc_actinobacterium_partial_Sliv_136_FM:0.)[&label=56..,Unc_bacterium_ncd_JF.)[&label=84..)[&label=67..,Unc_rubrobacter_sp_354H_AY.)[&label=98..,((((((A_2_1A_3B_33_x:0.0,Unc_bacterium_ncd_JF.0)[&label=33..,((A_3_1_3B_67_x:0.,Unc_bacterium_ncd_JF.)[&label=33..,B_1_6_1B_128_x:0.)[&label=33..)[&label=33..,A_2_3_2B_45_x:0.)[&label=83..,bacterium_DRV_B001_AY.)[&label=81.061]:0.,Unc_actinobacterium_E1B_D2_114_EF.)[&label=99..,(A_2_1A_3B_97_x:0.,Unc_actinobacterium_partial_UMAB_cl_47_:0.)[&label=94..)[&label=76.30594366)[&label=64..)[&label=96..,(Rubrobacter_taiwanensis_LS_293_AF.,Rubrobacter_xylanophilus_X521464)[&label=76..)[&label=100]:0.,(((((A_2_1A_3B_98_x:0.,(Solirubrobacter_soli_AB.,(Solirubrobacter_sp_Gsoil_917_AB.,Unc_bacterium_AKIW658_DQ.)[&label=54..)[&label=81..)[&label=76..,((B_1_4_1B_105_x:0.,Unc_actinobacterium_partial_UMAB_cl_13_:0.)[&label=58..,(Rubrobacteridae_bacterium_Gsoil_1167_fo:0.,Unc_actinobacterium_Fl_1F_C10_EF.0)[&label=49..)[&label=98..)[&label=60..,Conexibacter_woesei_NR_.)[&label=88.2748933,Patulibacter_sp_P4_5_EU.)[&label=67..,(A_3_3_3B_91_x:0.,Unc_bacterium_2_9A_EU.)[&label=91..)[&label=97..)[&label=100]:0.,((A_2_4B_3B_36_x:0.,Amycolatopsis_sp_13676C_EU.)[&label=77..,((A_3_3_3B_99_x:0.,Amycolatopsis_sp_232068_GU.0)[&label=99..,((Actinobacterium_P23_DQ.,B_1_3_1B_79_x:0.)[&label=98..,((B_1_7_1B_110_x:0.,Mycobacterium_chlorophenolicum_X790654)[&label=99..,Nocardia_asteroides_Z265219)[&label=64..)[&label=99..)[&label=73..)[&label=77..)[&label=35..,(A_2_4B_3B_125_x:0.,(A_2_4B_3B_169_x:0.,(((((A_3_1_2B_38_x:0.,Pseudonocardia_sp_RI44_RCaA106_for_AB54:0.)[&label=33..,(A_3_1_3B_70_x:9.,A_3_3_3B_118_x:0.)[&label=96..)[&label=78..,Pseudonocardia_sp_MN08_A0270_for_AB7526606)[&label=98..,A_3_3_3B_51_x:1.)[&label=83..,(((A_3_3_3B_110_x:0.,(((A_3_3_3B_58_x:0.,Pseudonocardia_alaniniphila_FR.)[&label=96.06137529,Pseudonocardia_sp_TFS_1235_EF.)[&label=62.18392102,Pseudonocardia_hydrocarbonoxydans_strai:0.)[&label=83..)[&label=33..,Pseudonocardia_petroleophila_strain_IMS:0.)[&label=33..,Pseudonocardia_sp_YIM_63233_FJ.)[&label=42..)[&label=98..)[&label=64..)[&label=88..)[&label=99..)[&label=75..,(((((B_1_4_1B_62_x:0.,Marmoricola_sp_Sco_A36_FN.)[&label=55..,Marmoricola_aequoreus_partial_type_stra:0.)[&label=34..,((Marmoricola_aurantiacus_Y4719E-7,Nocardioides_plantarum_X59374)[&label=76..,Marmoricola_sp_BAC242_EU.)[&label=95..)[&label=100]:0.0631198,B_1_4_1B_69_x:7.)[&label=99..,(((B_1_4_1B_80_x:0.,Humicoccus_sp_KCTC_19426_EU.0)[&label=33..,B_1_7_1B_62_x:0.)[&label=89..,Humicoccus_flavidus_DQ.)[&label=65..)[&label=96..)[&label=99..,((((A_2_1A_3B_64_x:1.,(A_2_4B_3B_55_x:0.,A_3_3_3B_105_x:0.)[&label=97..)[&label=76..,Kineococcus_sp_1P02MC_EU.)[&label=96..,(B_1_3_1B_55_x:0.,Frankiaceae_isolate_G10Namibia_X874225)[&label=85..)[&label=82..,(B_1_4_1B_92_x:0.,Kineosporia_aurantiaca_X885594)[&label=88..)[&label=95..,((((((((((((A_2_1a_2B_9_x:0.,A_3_1_3B_61_x:0.)[&label=76..,((A_2_4B_2B_5_x:0.0,A_3_3_3B_125_x:0.)[&label=33..,(((Antarctic_bacterium_R_8287_partial_stra:0.0,Frigoribacterium_sp_NMC14_GU.0)[&label=99..,Unc_Microbacteriaceae_bacterium_B04_04A:0.)[&label=56..,Unc_bacterium_1_1E_EU.)[&label=53..)[&label=85..)[&label=95..,Clavibacter_sp_Ens76_DQ.)[&label=89..,Frigoribacterium_sp_Enf57_DQ.)[&label=33..6633E-5,RP_1_5_1B_140_x:1.)[&label=37..,Rathayibacter_iranicus_strain_ICPB190833)[&label=98..,Curtobacterium_flaccumfaciens_strain_2P:0.)[&label=80..,(A_2_4B_3B_57_x:0.,(A_3_1_3B_98_x:0.,Micrococcineae_bacterium_4_C16_66_EF540:5.)[&label=58..)[&label=98..)[&label=59..,(((A_2_3_2B_44_x:0.,(Arthrobacter_sp_VTT_E_EF.0,B_1_3_1B_58_x:0.0)[&label=33..)[&label=93..,(A_2_4B_3B_4_x:3.,(A_3_1_3B_78_x:0.,(Arthrobacter_sp_210_41_GQ.0,Arthrobacter_sp_D42008_FJ.0)[&label=33..)[&label=99..)[&label=43..)[&label=99..,A_2_4B_3B_3_x:7.)[&label=99.8735175)[&label=64..,Cellulomonas_chitinilytica_AB.)[&label=93.7991337,Actinobacteria_from_anoxic_bulk_soil_x:0.)[&label=44..,(((B_1_4_1B_104_x:0.,((B_1_4_1B_109_x:0.,Phycicoccus_aerophilum_strain_.0)[&label=83..,Phycicoccus_dokdonensis_strain_DS_8_EF5:0.)[&label=88..)[&label=99..,(B_1_4_1B_68_x:1.,Lapillicoccus_jejuensis_AM.)[&label=59..)[&label=90..,(B_1_4_1B_73_x:0.,Demetria_terragena_strain_HK1_0089_NR02:0.)[&label=99..)[&label=67..)[&label=72..);
set appearance.backgroundColour=#-1;
set appearance.branchColorAttribute="User Selection";
set appearance.branchLineWidth=1.0;
set appearance.foregroundColour=#-;
set appearance.selectionColour=#-4925954;
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontSize=8.0;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set nodeBars.barWidth=4.0;
set nodeLabels.displayAttribute="label";
set nodeLabels.fontSize=7.0;
set nodeLabels.significantDigits=2;
set polarLayout.alignTipLabels=
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=0;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=
set scaleAxis.automaticScale=
set scaleAxis.fontSize=8.0;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=1.0;
set scaleAxis.minorTicks=0.5;
set scaleAxis.origin=0.0;
set scaleAxis.significantDigits=4;
set scaleBar.automaticScale=
set scaleBar.fontSize=7.0;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.05;
set scaleBar.significantDigits=4;
set tipLabels.displayAttribute="Taxon names";
set tipLabels.fontSize=7.0;
set tipLabels.significantDigits=2;
set trees.order=
set trees.orderType="increasing";
set trees.rooting=
set trees.rootingType="User Selection";
set trees.transform=
set trees.transformType="cladogram";
Chlorophyta and other eukaryotes
dimensions ntax=111;
Pyramimonas_propulsa_AB017123
RP_2_6_1E_176_x
B_1_4_1E_101_x
Myrmecia_sp_H1VF1_AF513369
RP_2_6_1E_142_x
B_1_6_1E_70_x
Isohypsibius_prosostomus_voucher_Ip_Niv
cher_6_1E_117_x
B_1_7_1E_58_x
Oxytrichidae_env_sample_Amb_1444_EF0239
Tetrahymena_thermophila_X56165
Unc_eukaryote_VE52_FJ790587
A_3_3_1E_55_x
Chlorella_saccharophila_X73991
Propallene_sp_longiceps_F_for_AB292196
B_1_4_1E_103_x
Dicksoniaceae_env_sample_Amb_629_EF0233
B_1_3_1E_62_x
Eimeriidae_env_sample_Amb__1393_EF02393
B_1_6_1E_115_x
Printzina_lagenifera_DQ399586
Chlorella_sp_MBIC10057_for_AB058305
B_1_4_1E_136_x
A_3_1_1E_46_x
Chlamydomonas_reinhardtii_M32703
B_1_4_1E_66_x
Unc_Dunaliellaceae_Amb_18S_930_EF023670
RP_2_6_1E_73_x
Parietochloris_alveolaris_strain_UTEX_8
Heliophrya_erhardi_3_AY007447
B_1_7_1E_141_x
Physarum_didermoides_19S_AY183449
T_asymmetrica_encoding_Z21553
RP_2_6_1E_170_x
Botryidiopsidaceae_sp_PAB_485_AM695636
Acrochaete_repens_E093db_FJ715684
Didymium_nigripes_AF239230
A_2_4b_1E_35_x
Unc_Viridiplantae_E108_09D_HQ188966
Trebouxiophyte_sp_UR474_AY762604
Tusneae_019A1_Z68702
Klebsormidium_flaccidum_strain_SAG_791_
Unc_marine_eukaryote_NA2_1H8_EF526889
Trebouxia_erici_for_AB080310
B_1_4_1E_131_x
RP_2_6_1E_186_x
Stylonychia_pustulata_X03947
A_2_1a_1E_10_x
Klebsormidium_subtilissimum_EF372517
A_3_3_1E_1_x
B_1_4_1E_139_x
B_1_7_1E_107_x
Chlorella_ellipsoidea_partial_ITS1_FM94
A_3_3_1E_42_x
Unc_Dunaliellaceae_Amb__606_EF023293
Chlorella_sp_UTEX_318_EF159951
B_1_3_1E_99_x
Phyllosiphon_arisari_isolate_PY9a1_JF30
A_3_1_1E_52_x
cher_2_1E_115_x
Eniochthonius_minutissimus_EF091428
Dunaliella_salina_M84320
A_2_1a_1E_2_x
Tarboricola_SAG_219_1a_Z68705
A_3_1_1E_27_x
B_1_6_1E_109_x
A_3_1_1E_30_x
Phaeothamnion_confervicola_AB365203
RP_2_6_1E_10_x
Timpressa_gene_encoding_Z21551
Botrydiopsis_intercedens_U41647
Ibalia_sp_JMH_2010_GQ410645
B_1_4_1E_135_x
Leptus_sp_AP_2010_voucher_MZSPAC_00016_
A_2_4b_1E_10_x
B_1_4_1E_117_x
B_1_7_1E_85_x
RP_2_6_1E_12_x
Coenocystis_inconstans_AB017435
Microcaeculus_JCO_1999_AF287232
P_truncata_X95935
B_1_4_1E_119_x
Botrydiopsis_pyrenoidosa_partial_strain
B_1_7_1E_108_x
B_1_7_1E_133_x
B_1_4_1E_132_x
Stichococcus_bacillaris_strain_SAG_335_
A_3_1_1E_8_x
B_1_4_1E_134_x
A_3_1_1E_18_x
Stichococcus_bacillaris_for_strain_AB05
Hyperamoeba_flagellata_complete_sequenc
A_3_1_1E_14_x
B_1_4_1E_56_x
Heterococcus_caespitosus_AM490820
Ostreococcus_tauri_Y15814
Oxytricha_granulifera_X53486
Elliptochloris_sp_SAG_2117_complete_seq
Trebouxiophyte_sp_UR75_AY762607
Ephelota_sp_QD_5_complete_sequence_DQ83
Unc_eukaryote_Th_HM030919
Limulus_polyphemus_U91490
Discophrya_collini_L26446
B_1_4_1E_53_x
Stichococcus_bacillarisCCAP379_FR717539
B_1_4_1E_144_x
'Uronema_sp._CCAP_384_1_FR717538'
B_1_3_1E_88_x
cher_2_1E_89_x
Unc_eukaryote_Th_HM030915
A_2_1a_1E_32_x
tree [&r] tree_1 = ((((((((((((A_2_1a_1E_10_x:0.,Unc_Dunaliellaceae_Amb__606_EF.)[&label=92.99261667,A_2_4b_1E_35_x:0.)[&label=37..,Chlorella_ellipsoidea_partial_ITS1_FM94:6.)[&label=33..,(B_1_4_1E_101_x:0.,(B_1_4_1E_66_x:3.,Chlorella_sp_UTEX_318_EF.)[&label=84..)[&label=66..)[&label=33..,Trebouxiophyte_sp_UR75_AY.)[&label=96..,Chlorella_sp_MBIC10057_for_AB.)[&label=52..,(A_2_1a_1E_32_x:0.,Phyllosiphon_arisari_isolate_PY9a1_JF30:0.)[&label=100]:0.)[&label=42..,Chlorella_saccharophila_X6219899)[&label=99..,(B_1_4_1E_136_x:0.,Elliptochloris_sp_SAG_2117_complete_seq:0.)[&label=100]:0.)[&label=78..,Parietochloris_alveolaris_strain_UTEX_8:0.)[&label=75..,(((((((A_2_4b_1E_10_x:0.,Myrmecia_sp_H1VF1_AF.)[&label=33..,A_3_3_1E_1_x:0.)[&label=33..,Eimeriidae_env_sample_Amb__1393_EF3628607)[&label=96..,((A_3_3_1E_55_x:0.,Trebouxia_erici_for_AB.0)[&label=34..,(B_1_3_1E_99_x:0.,B_1_4_1E_53_x:0.)[&label=54..)[&label=100]:0.)[&label=64..,(((((((((((B_1_4_1E_103_x:0.,(B_1_4_1E_119_x:0.,B_1_4_1E_139_x:0.)[&label=100]:0.)[&label=81..,(B_1_4_1E_134_x:0.,B_1_4_1E_56_x:0.)[&label=33..)[&label=76..,Unc_eukaryote_VE52_FJ.)[&label=33..,(Unc_Viridiplantae_E108_09D_HQ.,Unc_marine_eukaryote_NA2_1H8_EF.)[&label=33..)[&label=33..,((((B_1_6_1E_115_x:0.,(RP_2_6_1E_10_x:0.,cher_2_1E_89_x:0.)[&label=33..)[&label=33..,(B_1_7_1E_107_x:0.0,RP_2_6_1E_170_x:0.0)[&label=33..)[&label=33..,RP_2_6_1E_176_x:0.)[&label=70..,(T_asymmetrica_encoding_Z8717E-5,Tarboricola_SAG_219_1a_Z1390287)[&label=57..)[&label=33..)[&label=33.42218E-5,(B_1_7_1E_133_x:0.,B_1_7_1E_141_x:0.)[&label=84..)[&label=75..,cher_2_1E_115_x:0.)[&label=33..,RP_2_6_1E_186_x:2.)[&label=92..,Tusneae_019A1_Z4278502)[&label=88..,Timpressa_gene_encoding_Z1764598)[&label=40..,((B_1_4_1E_144_x:0.0,Unc_eukaryote_Th_HM.)[&label=33..,RP_2_6_1E_142_x:0.)[&label=34..)[&label=99..)[&label=97..,(B_1_7_1E_58_x:0.,(Unc_eukaryote_Th_HM.,cher_6_1E_117_x:0.0)[&label=42..)[&label=100]:0.)[&label=79..,(((B_1_3_1E_62_x:0.,(Stichococcus_bacillarisCCAP379_FR.0,Stichococcus_bacillaris_strain_SAG_335_:0.)[&label=33..)[&label=99..,(B_1_3_1E_88_x:0.,Trebouxiophyte_sp_UR474_AY.)[&label=53..)[&label=93..,Stichococcus_bacillaris_for_strain_AB05:0.)[&label=99..)[&label=49..)[&label=58..,(((((A_2_1a_1E_2_x:0.,(B_1_4_1E_135_x:0.,Printzina_lagenifera_DQ.)[&label=43..)[&label=100]:0.,Acrochaete_repens_E093db_FJ.)[&label=72..,(Chlamydomonas_reinhardtii_M496873,Dunaliella_salina_M886187)[&label=54..)[&label=82..,((((((A_3_1_1E_14_x:0.,A_3_1_1E_18_x:0.)[&label=52.30096745,(Dicksoniaceae_env_sample_Amb_629_EF8366E-7,P_truncata_X6531459)[&label=65..)[&label=100]:0.,(B_1_4_1E_117_x:0.,((((B_1_4_1E_131_x:0.0,Klebsormidium_flaccidum_strain_SAG_791_:0.0)[&label=33..0,Klebsormidium_subtilissimum_EF.0)[&label=33..0,'Uronema_sp._CCAP_384_1_FR.0)[&label=33..,B_1_6_1E_70_x:0.)[&label=54..)[&label=94..)[&label=76..,((((((((((A_3_1_1E_27_x:1.,A_3_1_1E_30_x:0.)[&label=33..,A_3_3_1E_42_x:0.)[&label=33..,A_3_1_1E_52_x:0.)[&label=100]:0.,(((A_3_1_1E_46_x:0.,Leptus_sp_AP_2010_voucher_MZSPAC_0649569)[&label=65..,Microcaeculus_JCO_1999_AF.)[&label=99..,Eniochthonius_minutissimus_EF.)[&label=51..)[&label=100]:0.,Limulus_polyphemus_U610282)[&label=92..,Propallene_sp_longiceps_F_for_AB.)[&label=66..,Ibalia_sp_JMH_2010_GQ.)[&label=47..,(B_1_7_1E_108_x:0.,Isohypsibius_prosostomus_voucher_Ip_Niv:0.)[&label=100]:0.)[&label=100]:0.,(((B_1_7_1E_85_x:0.,Physarum_didermoides_19S_AY.)[&label=92..,Didymium_nigripes_AF.)[&label=55..,Hyperamoeba_flagellata_complete_sequenc:0.)[&label=100]:0.)[&label=43..,((((((B_1_4_1E_132_x:0.,Heterococcus_caespitosus_AM.)[&label=92.3793305,(Botryidiopsidaceae_sp_PAB_485_AM.,RP_2_6_1E_12_x:0.)[&label=97..)[&label=92..,Botrydiopsis_intercedens_U953185)[&label=100]:0.,Phaeothamnion_confervicola_AB.)[&label=72..,Botrydiopsis_pyrenoidosa_partial_strain:0.)[&label=100]:0.0821274,(((((B_1_6_1E_109_x:1.,Oxytrichidae_env_sample_Amb_1444_EF3680016)[&label=89..,Oxytricha_granulifera_X7627551)[&label=89.2440467,Stylonychia_pustulata_X855835)[&label=100]:0.,Tetrahymena_thermophila_X65184)[&label=54..,(((Discophrya_collini_L24942,Heliophrya_erhardi_3_AY.)[&label=99..,RP_2_6_1E_73_x:0.)[&label=85..,Ephelota_sp_QD_5_complete_sequence_DQ83:0.)[&label=100]:0.1516903)[&label=99..)[&label=93..)[&label=99.1474538)[&label=52..,Pyramimonas_propulsa_AB.)[&label=87..,Ostreococcus_tauri_Y328461)[&label=100]:0.)[&label=78..,A_3_1_1E_8_x:0.)[&label=89..,(Coenocystis_inconstans_AB.,Unc_Dunaliellaceae_Amb_18S_930_EF.)[&label=81..);
set appearance.backgroundColour=#-1;
set appearance.branchColorAttribute="User Selection";
set appearance.branchLineWidth=1.0;
set appearance.foregroundColour=#-;
set appearance.selectionColour=#-4925954;
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontSize=8.0;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=85;
set nodeBars.barWidth=4.0;
set nodeLabels.displayAttribute="label";
set nodeLabels.fontSize=7.0;
set nodeLabels.significantDigits=2;
set polarLayout.alignTipLabels=
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=0;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=
set scaleAxis.automaticScale=
set scaleAxis.fontSize=8.0;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=0.25;
set scaleAxis.minorTicks=0.05;
set scaleAxis.origin=0.0;
set scaleAxis.significantDigits=4;
set scaleBar.automaticScale=
set scaleBar.fontSize=7.0;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.0;
set scaleBar.significantDigits=4;
set tipLabels.displayAttribute="Taxon names";
set tipLabels.fontSize=8.0;
set tipLabels.significantDigits=2;
set trees.order=
set trees.orderType="increasing";
set trees.rooting=
set trees.rootingType="User Selection";
set trees.transform=
set trees.transformType="cladogram";
dimensions ntax=162;
B_1_7_1E_98_x
'Cladophialophora_sp_CBS_985.96_nuclear_'
C_apollinis_Y11713
RP_2_6_1E_124_x
RP_2_6_1E_144_x
A_3_3_1E_13_x
RP_1_5_1E_185_x
Leucosporidium_scottii_isolate_AFTOL_ID
B_1_3_1E_68_x
B_1_4_1E_50_x
Xanthoria_candelaria_AM498768
RP_1_5_1E_150_x
A_3_3_1E_12_x
Scleroconidioma_sphagnicola_AY220610
Davidiella_tassiana_104m_complete_seque
A_2_1a_1E_33_x
Norrlinia_peltigericola_AY779280
Acrospermum_compressum_specimen_voucher
B_1_7_1E_116_x
Aureobasidium_pullulans_strain_P2A1_EU6
RP_1_5_1E_25_x
B_1_7_1E_96_x
RP_1_5_1E_3_x
Bensingtonia_phylladus_strain_JCM_7476_
Physcia_aipolia_AF241542
A_2_2a_1E_40_x
RP_2_6_1E_15_x
RP_2_6_1E_146_x
B_1_4_1E_121_x
RP_2_6_1E_166_x
B_1_3_1E_130_x
Crinula_caliciiformis_AY544729
RP_1_5_1E_192_x
A_3_3_1E_52_x
RP_2_6_1E_6_x
Capronia_dactylotricha_nuclear_AJ232943
Capnobotryella_sp_MA_3615_AM746203
RP_2_6_1E_190_x
RP_2_6_1E_2_x
Geomyces_destructans_isolate_MmyotGER_1
B_1_6_1E_56_x
B_1_6_1E_101_x
A_3_3_1E_3_x
RP_2_6_1E_27_x
Blastocladiales_sp_TJ_2007a_EF565163
B_1_3_1E_142_x
A_2_4b_1E_33_x
A_2_1a_1E_21_x
A_2_4b_1E_13_x
A_3_1_1E_9_x
Alternaria_alternata_U05194
A_2_1a_1E_27_x
Bensingtonia_miscanthi_strain_JCM_5733_
RP_2_6_1E_54_x
RP_1_5_1E_42_x
Capnobotryella_sp_MA_3612_AM746202
RP_2_6_1E_113_x
Capnobotryella_sp_MA_4701_AJ972856
Cryptococcus_sp_CBS_6578_AB085801
Verrucaria_dolosa_AFTOL_ID_2253_EF68986
RP_2_6_1E_42_x
Triparticalcar_arcticum_DQ536480
Phoma_sp_CCF3818_FJ430776
Rhinocladiella_sp_MA_4765_AJ972862
Thelebolus_stercoreus_strain_CBS__17_69
RP_2_6_1E_122_x
Taphrina_californica_D14166
RP_1_5_1E_156_x
Synchaetomella_lunatospora_AY342013
Unc_Chytridiomycota_T5P2AeA06_GQ995323
Knufia_cryptophialidica_strain_DAOM_216
Cladosporium_cladosporioides_EF392680
Collophora_rubra_strain_STE_U_6110_GQ15
RP_2_6_1E_99_x
B_1_4_1E_69_x
Rhodotorula_marina_AB126645
Sarcinomyces_petricola_Y18702
B_1_3_1E_65_x
Trichoglossum_hirsutum_AFTOL_ID_64_AY54
Cyphellophora_laciniata_isolate_AFTOL_I
RP_1_5_1E_130_x
Cochliobolus_sativus_U42479
Anidulans_isolate_CBS100_20_X78539
RP_1_5_1E_30_x
A_2_2a_1E_2_x
Cf_Arthoniales_sp_CCFEE_5303_GU250331
Sporobolomyces_coprosmae_D66880
Alternaria_sp_CBS_isolate_AFTOL_ID_1579
Coniosporium_sp_MA_4597_AJ972863
Cryptococcus_vishniacii_AB032654
Ascomycota_sp_CCFEE_5493_GU250354
Taphrina_pruni_subcordatae_AB000957
RP_1_5_1E_47_x
Porpidia_macrocarpa_AY456687
Endoconidioma_populi_AY604526
A_3_3_1E_22_x
Phaeosphaeriaceae_sp_11F_FJ744122
A_2_2a_1E_51_x
B_1_3_1E_79_x
A_2_2a_1E_17_x
Filobasidium_floriforme_D13460
Sporobolomyces_foliicola_AB021671
RP_2_6_1E_157_x
RP_2_6_1E_173_x
B_1_6_1E_116_x
Mycosphaerella_fragariae_strain_CBS_719
A_2_4b_1E_30_x
Chaetothyriales_sp_TRN1_FJ358319
Bullera_nica_for_D78330
Leptosphaeria_maculans_Unity_U04238
B_1_6_1E_95_x
RP_1_5_1E_10_x
Cucurbitaria_berberidis_18S_U42481
Entophlyctis_helioformis_isolate_AFTOL_
Pleosporales_sp_CBS_536_isolate_AFTOL_I
Cryptococcus_dimennae_AB032627
Kurtzmanomyces_nectairei_D64122
Bullera_globispora_D31650
Phaeosphaeria_sp_sn23_1_EU189215
B_1_3_1E_49_x
Kondoa_malvinella_D13776
B_1_7_1E_113_x
RP_2_6_1E_148_x
B_1_3_1E_143_x
Chaetothyriales_sp_TRN115_FJ358324
Chaetothyriales_sp_TRN4_FJ358320
Verrucaria_mucosa_isolate_AFTOL_ID_2264
RP_1_5_1E_21_x
RP_1_5_1E_9_x
RP_1_5_1E_23_x
Phoma_destructiva_for_isolate_AB454203
B_1_6_1E_77_x
Unc_Tremellomycetes_FM178233
Pleospora_herbarum_ribosomal_RNA_U43448
RP_1_5_1E_55_x
A_3_1_1E_6_x
A_2_1a_1E_28_x
Polyblastia_melaspora_AFTOL_ID_1356_EF6
RP_1_5_1E_52_x
Alternaria_raphani_AR6_nuclear_U05199
RP_1_5_1E_141_x
Unc_eukaryote_Th_HM030914
Rhodotorula_aurantiaca_for_AB030354
RP_1_5_1E_142_x
Lepolichen_coccophorus_AF274110
RP_1_5_1E_129_x
Xanthoria_sorediata_AM495020
Cercospora_beticola_strain_CPC_11557_AY
B_1_3_1E_52_x
B_1_3_1E_55_x
RP_1_5_1E_15_x
Lecania_cyrtella_AF091589
B_1_4_1E_57_x
RP_1_5_1E_147_x
A_3_3_1E_59_x
A_2_1a_1E_41_x
RP_1_5_1E_163_x
B_1_4_1E_126_x
Teratosphaeria_microspora_36i_EU343025
C_perforans_Y11714
Bipolaris_sp_JF2_and_internal_transcrib
RP_1_5_1E_146_x
tree [&r] tree_1 = ((((((((((((A_2_1a_1E_21_x:0.,(A_2_1a_1E_28_x:0.,A_2_1a_1E_33_x:0.)[&label=56..)[&label=33..,A_2_1a_1E_27_x:0.0)[&label=33..,(A_3_3_1E_52_x:0.,RP_2_6_1E_42_x:9.)[&label=33..)[&label=33..,A_3_3_1E_22_x:0.)[&label=67..,(Norrlinia_peltigericola_AY.,Polyblastia_melaspora_AFTOL_ID_1356_EF6:0.)[&label=73..)[&label=76..,Verrucaria_dolosa_AFTOL_ID_2253_EF8006577)[&label=84..,Verrucaria_mucosa_isolate_AFTOL_ID_265442)[&label=96..,(((A_2_4b_1E_13_x:0.,Cyphellophora_laciniata_isolate_AFTOL_I:1.)[&label=99..,(((B_1_6_1E_56_x:0.,RP_2_6_1E_15_x:0.)[&label=73..,(RP_2_6_1E_146_x:0.,Rhinocladiella_sp_MA_4765_AJ.)[&label=90..)[&label=93..,(Capronia_dactylotricha_nuclear_AJ.,'Cladophialophora_sp_CBS_985.96_nuclear_':0.)[&label=89..)[&label=47..)[&label=56..,(((((Ascomycota_sp_CCFEE_5493_GU.,(((RP_1_5_1E_146_x:0.,RP_2_6_1E_144_x:0.)[&label=40.98048E-4,RP_2_6_1E_157_x:0.)[&label=99..,RP_2_6_1E_124_x:9.)[&label=58..)[&label=99..,Coniosporium_sp_MA_4597_AJ.)[&label=54..,(((C_apollinis_Y9371225,C_perforans_Y6824E-4)[&label=69..,(((Chaetothyriales_sp_TRN115_FJ.,RP_2_6_1E_166_x:0.0)[&label=33..,Knufia_cryptophialidica_strain_DAOM_216:0.0)[&label=33..,RP_2_6_1E_190_x:0.)[&label=72..)[&label=70..,RP_1_5_1E_185_x:0.)[&label=33..)[&label=96..,(Chaetothyriales_sp_TRN1_FJ.,Chaetothyriales_sp_TRN4_FJ.)[&label=52..)[&label=74.62674133,RP_2_6_1E_148_x:0.)[&label=95..)[&label=100]:0.)[&label=99..,Anidulans_isolate_CBS100_20_X76208)[&label=98..,((((((((((((((B_1_3_1E_130_x:0.,B_1_3_1E_79_x:0.0)[&label=75.39625256,B_1_3_1E_143_x:0.)[&label=66..,(B_1_3_1E_68_x:0.0,Kondoa_malvinella_D0615E-5)[&label=33..)[&label=89..,(RP_1_5_1E_130_x:0.,RP_1_5_1E_21_x:0.0)[&label=94..)[&label=73..,Bensingtonia_miscanthi_strain_JCM_832592)[&label=100]:0.,B_1_3_1E_52_x:0.)[&label=51..,Bensingtonia_phylladus_strain_JCM_751234)[&label=78..,(Kurtzmanomyces_nectairei_D068662,RP_2_6_1E_113_x:0.)[&label=100]:0.)[&label=100]:0.,(B_1_3_1E_142_x:0.,Leucosporidium_scottii_isolate_AFTOL_ID:0.)[&label=100]:0.)[&label=76..,((B_1_4_1E_126_x:0.,Rhodotorula_aurantiaca_for_AB.)[&label=95..,(((((RP_1_5_1E_129_x:0.,RP_1_5_1E_23_x:0.)[&label=33..,Sporobolomyces_coprosmae_D9889045)[&label=33..,Unc_eukaryote_Th_HM.)[&label=97..,((RP_1_5_1E_163_x:0.,RP_1_5_1E_3_x:0.)[&label=68..,Sporobolomyces_foliicola_AB.)[&label=68..)[&label=83..,Rhodotorula_marina_AB.)[&label=85..)[&label=99..)[&label=100]:0.,((((((B_1_7_1E_116_x:0.,Taphrina_californica_D5387E-5)[&label=33..,(RP_1_5_1E_150_x:4.,Unc_Tremellomycetes_FM.)[&label=99..)[&label=95..,(Cryptococcus_sp_CBS_6578_AB.,RP_1_5_1E_30_x:0.)[&label=98.78365707)[&label=99..,((Bullera_globispora_D0756175,(RP_1_5_1E_156_x:9.,RP_1_5_1E_9_x:0.)[&label=33..)[&label=73..,Cryptococcus_dimennae_AB.)[&label=99..)[&label=87..,Bullera_nica_for_D579221)[&label=99..,(((Cryptococcus_vishniacii_AB.0,RP_1_5_1E_192_x:9.)[&label=100]:0.,((Filobasidium_floriforme_D,RP_1_5_1E_142_x:0.0)[&label=33..0,RP_1_5_1E_141_x:0.0)[&label=52.32181E-4)[&label=99..,RP_1_5_1E_52_x:8.)[&label=76..)[&label=98..)[&label=99..,((((B_1_4_1E_50_x:0.,RP_2_6_1E_6_x:0.)[&label=85..,RP_2_6_1E_99_x:0.)[&label=100]:0.,Blastocladiales_sp_TJ_2007a_EF.)[&label=45..,(Entophlyctis_helioformis_isolate_AFTOL_:0.,(Triparticalcar_arcticum_DQ.,Unc_Chytridiomycota_T5P2AeA06_GQ.)[&label=89..)[&label=98..)[&label=100]:0.)[&label=91..,Taphrina_pruni_subcordatae_AB.)[&label=99..,Synchaetomella_lunatospora_AY.)[&label=59..)[&label=80..,(B_1_7_1E_98_x:0.,(Cf_Arthoniales_sp_CCFEE_5303_GU.,RP_1_5_1E_25_x:0.)[&label=60..)[&label=98..)[&label=65..,(((((((((((((((A_2_1a_1E_41_x:0.,A_2_2a_1E_17_x:0.)[&label=33..,(A_3_3_1E_59_x:0.,Alternaria_alternata_U6175E-4)[&label=33..)[&label=33..,RP_1_5_1E_55_x:0.0)[&label=33..,Alternaria_sp_CBS_isolate_AFTOL_ID_)[&label=33..,A_2_2a_1E_40_x:0.)[&label=98..,Alternaria_raphani_AR6_nuclear_U5043E-5)[&label=99..,Pleospora_herbarum_ribosomal_RNA_U7514E-6)[&label=90..,Bipolaris_sp_JF2_and_internal_transcrib:0.0)[&label=33.35386E-6,RP_2_6_1E_2_x:0.)[&label=33..,Cochliobolus_sativus_U9754394)[&label=100]:0.,(((A_3_3_1E_13_x:0.,(Leptosphaeria_maculans_Unity_U9713284,(RP_1_5_1E_10_x:0.,RP_1_5_1E_147_x:9.)[&label=85..)[&label=48..)[&label=33..,((B_1_3_1E_55_x:0.,Phaeosphaeria_sp_sn23_1_EU.)[&label=86..,Pleosporales_sp_CBS_536_isolate_AFTOL_I:0.)[&label=71.0887E-4)[&label=33..,Cucurbitaria_berberidis_18S_U9490116)[&label=46..)[&label=75..,((((A_2_4b_1E_30_x:0.,Phoma_destructiva_for_isolate_AB.0)[&label=33..,A_2_4b_1E_33_x:0.)[&label=75.7605E-4,B_1_4_1E_69_x:0.)[&label=33..,(Phaeosphaeriaceae_sp_11F_FJ.0,Phoma_sp_CCF3818_FJ.0)[&label=33..)[&label=64..)[&label=100]:0.,(A_3_3_1E_12_x:0.,Acrospermum_compressum_specimen_voucher:0.)[&label=100]:0.)[&label=68..,((RP_2_6_1E_173_x:0.,RP_2_6_1E_54_x:0.)[&label=99..,Sarcinomyces_petricola_Y922748)[&label=84..)[&label=58..,(((A_2_2a_1E_2_x:0.,((A_2_2a_1E_51_x:9.,Davidiella_tassiana_104m_complete_seque:9.)[&label=33.33458E-5,Cladosporium_cladosporioides_EF.0)[&label=33..)[&label=99..,(((((A_3_1_1E_6_x:9.,B_1_3_1E_49_x:9.)[&label=33..,Mycosphaerella_fragariae_strain_CBS_719:9.)[&label=99..,(B_1_3_1E_65_x:0.,Cercospora_beticola_strain_CPC_11557_AY:0.)[&label=33..)[&label=89..,((Capnobotryella_sp_MA_3612_AM.,RP_1_5_1E_42_x:0.)[&label=81..,((Capnobotryella_sp_MA_3615_AM.,RP_2_6_1E_122_x:0.)[&label=96..,(Capnobotryella_sp_MA_4701_AJ.,RP_1_5_1E_15_x:1.)[&label=99..)[&label=98..0091803)[&label=70..)[&label=96..,(RP_1_5_1E_47_x:9.,Teratosphaeria_microspora_36i_EU.)[&label=80..)[&label=64..)[&label=40..,((Aureobasidium_pullulans_strain_P2A1_EU6:0.,Scleroconidioma_sphagnicola_AY.)[&label=47..,Endoconidioma_populi_AY.)[&label=88..)[&label=92..)[&label=80..,(((((A_3_1_1E_9_x:0.,A_3_3_1E_3_x:0.)[&label=99..,(Crinula_caliciiformis_AY.,(Geomyces_destructans_isolate_MmyotGER_1:0.,Thelebolus_stercoreus_strain_CBS__17_69:0.)[&label=61..)[&label=80..)[&label=95..,Collophora_rubra_strain_STE_U_6110_GQ15:0.)[&label=87..,Trichoglossum_hirsutum_AFTOL_ID_64_AY54:0.)[&label=86.70309867,((((((B_1_4_1E_121_x:9.,B_1_4_1E_57_x:3.)[&label=100]:0.,Lecania_cyrtella_AF.)[&label=100]:0.,((B_1_6_1E_116_x:0.,(B_1_6_1E_77_x:0.,(((B_1_7_1E_113_x:0.,B_1_7_1E_96_x:0.0)[&label=65..,RP_2_6_1E_27_x:0.)[&label=68..,Xanthoria_candelaria_AM.)[&label=45..)[&label=58..)[&label=99..,Xanthoria_sorediata_AM.)[&label=99.6660684)[&label=45..,((B_1_6_1E_101_x:0.,B_1_6_1E_95_x:9.)[&label=52..,Physcia_aipolia_AF.)[&label=99..)[&label=98..,Porpidia_macrocarpa_AY.)[&label=90..,Lepolichen_coccophorus_AF.)[&label=60..)[&label=93..);
set appearance.backgroundColour=#-1;
set appearance.branchColorAttribute="User Selection";
set appearance.branchLineWidth=1.0;
set appearance.foregroundColour=#-;
set appearance.selectionColour=#-4925954;
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontSize=8.0;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set nodeBars.barWidth=4.0;
set nodeLabels.displayAttribute="label";
set nodeLabels.fontSize=7.0;
set nodeLabels.significantDigits=2;
set polarLayout.alignTipLabels=
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=0;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=
set scaleAxis.automaticScale=
set scaleAxis.fontSize=8.0;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=0.05;
set scaleAxis.minorTicks=0.025;
set scaleAxis.origin=0.0;
set scaleAxis.significantDigits=4;
set scaleBar.automaticScale=
set scaleBar.fontSize=6.0;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.0;
set scaleBar.significantDigits=4;
set tipLabels.displayAttribute="Taxon names";
set tipLabels.fontSize=7.0;
set tipLabels.significantDigits=2;
set trees.order=
set trees.orderType="increasing";
set trees.rooting=
set trees.rootingType="User Selection";
set trees.transform=
set trees.transformType="cladogram";